Gene detail information of Glyur000345s00015661.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G47435.23.00E-139formyltetrahydrofolate deformylase, putative
NRXP_007155675.10hypothetical protein PHAVU_003G221600g [Phaseolus vulgaris]
COGNP_214247.11.00E-72formyltetrahydrofolate deformylase [Aquifex aeolicus VF5]
Swissprottr|Q93YQ3|PURU1_ARATH2.00E-174Formyltetrahydrofolate deformylase 1, mitochondrial (Precursor)
trEMBLtr|V7CC20|V7CC20_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW27669.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold003459457198605-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01433purU EC:3.5.1.10 Glyoxylate and dicarboxylate metabolism map00630
One carbon pool by folatemap00670


Gene Ontology

biological_process

GO:0006189  'de novo' IMP biosynthetic process

GO:0008152  metabolic process

GO:0009058  biosynthetic process


molecular_function

GO:0008864  formyltetrahydrofolate deformylase activity

GO:0016597  amino acid binding

GO:0016742  hydroxymethyl-, formyl- and related transferase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000345s00015661.1PF00551.14Formyl_trans_N1273043.00E-33


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control8.267
SRR1783600control8.236
SRR1783602moderate drought stress11.555
SRR1811619moderate drought stress11.491

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain5.959
DRR006520Root Summer glycyrrhizin high producing strain5.652
DRR006521Root Winter glycyrrhizin high producing strain4.074
DRR006522Root Winter glycyrrhizin high producing strain4.124
DRR006523Root Summer glycyrrhizin low producing strain3.010
DRR006524Root Summer glycyrrhizin low producing strain3.027
DRR006525Leaf Summer glycyrrhizin high producing strain20.422
DRR006526Leaf Summer glycyrrhizin high producing strain20.010

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)17.250
SRR2868004Drought Stress(Tissue:root)16.654
SRR2967015Control (Tissue:root)16.191

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave22.171
SRR9715740Leave28.688
SRR9715741Leave18.330
SRR9715739Root1.575
SRR9715742Root3.568
SRR9715743Root2.436

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h2.630
SRR8749028MeJA induced 9h4.572
SRR8749029MeJA induced 9h3.176
SRR8749030Uninduced3.561
SRR8749031Uninduced2.169
SRR8749032Uninduced1.705

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root16.497
SRR8400027Control-Root15.404

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved