Gene detail information of Glyur000345s00015665.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G16650.1 | 0 | O-fucosyltransferase family protein |
| NR | XP_004508925.1 | 0 | PREDICTED: uncharacterized protein At1g04910-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|Q8W486|Y1491_ARATH | 9.00E-86 | Uncharacterized protein At1g04910 |
| trEMBL | tr|G7JIV4|G7JIV4_MEDTR | 0 | GDP-fucose O-fucosyltransferase-like protein {ECO:0000313|EMBL:AES90897.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00345 | 117785 | 123079 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GTnc |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000345s00015665.1 | PF10250.4 | O-FucT | 122 | 436 | 1.10E-91 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 14.609 |
| SRR1783600 | control | 14.618 |
| SRR1783602 | moderate drought stress | 12.406 |
| SRR1811619 | moderate drought stress | 12.248 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 11.174 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.080 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.333 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.166 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 16.044 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 16.178 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.905 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.770 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 24.461 |
| SRR2868004 | Drought Stress(Tissue:root) | 18.533 |
| SRR2967015 | Control (Tissue:root) | 19.615 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 12.222 |
| SRR9715740 | Leave | 9.672 |
| SRR9715741 | Leave | 10.644 |
| SRR9715739 | Root | 4.953 |
| SRR9715742 | Root | 13.293 |
| SRR9715743 | Root | 12.328 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 23.961 |
| SRR8749028 | MeJA induced 9h | 17.837 |
| SRR8749029 | MeJA induced 9h | 14.810 |
| SRR8749030 | Uninduced | 6.959 |
| SRR8749031 | Uninduced | 4.721 |
| SRR8749032 | Uninduced | 5.611 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 23.815 |
| SRR8400027 | Control-Root | 23.816 |