Gene detail information of Glyur000345s00015673.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G60580.1 | 9.00E-24 | C2H2-like zinc finger protein |
| NR | XP_003608704.1 | 4.13E-124 | hypothetical protein MTR_4g100860 [Medicago truncatula] |
| Swissprot | tr|Q9M202|ZAT9_ARATH | 3.00E-49 | Zinc finger protein ZAT9 |
| trEMBL | tr|G7JIV8|G7JIV8_MEDTR | 2.00E-124 | C2H2-type zinc-finger protein, putative {ECO:0000313|EMBL:AES90901.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00345 | 147361 | 148383 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2H2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000345s00015673.1 | PF13912.1 | zf-C2H2_6 | 4 | 26 | 3.10E-06 |
| Glyur000345s00015673.1 | PF13912.1 | zf-C2H2_6 | 227 | 246 | 0.00031 |
| Glyur000345s00015673.1 | PF13912.1 | zf-C2H2_6 | 269 | 292 | 1.90E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.810 |
| SRR1783600 | control | 0.870 |
| SRR1783602 | moderate drought stress | 1.033 |
| SRR1811619 | moderate drought stress | 0.946 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.113 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.005 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.309 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.112 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.152 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.464 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.219 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.056 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 15.672 |
| SRR2868004 | Drought Stress(Tissue:root) | 7.527 |
| SRR2967015 | Control (Tissue:root) | 8.065 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 15.354 |
| SRR9715740 | Leave | 2.250 |
| SRR9715741 | Leave | 16.948 |
| SRR9715739 | Root | 2.161 |
| SRR9715742 | Root | 2.411 |
| SRR9715743 | Root | 1.745 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 28.235 |
| SRR8749028 | MeJA induced 9h | 22.101 |
| SRR8749029 | MeJA induced 9h | 26.362 |
| SRR8749030 | Uninduced | 10.998 |
| SRR8749031 | Uninduced | 1.054 |
| SRR8749032 | Uninduced | 1.363 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 4.435 |
| SRR8400027 | Control-Root | 8.705 |