Gene detail information of Glyur000346s00018183.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G19460.1 | 2.00E-177 | UDP-Glycosyltransferase superfamily protein |
| NR | XP_007156327.1 | 0 | hypothetical protein PHAVU_003G277200g [Phaseolus vulgaris] |
| COG | YP_001546590.1 | 2.00E-20 | group 1 glycosyl transferase [Herpetosiphon aurantiacus DSM 785] |
| trEMBL | tr|V7CHE3|V7CHE3_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW28321.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00346 | 88189 | 89721 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT4 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000346s00018183.1 | PF13439.1 | Glyco_transf_4 | 109 | 308 | 8.80E-17 |
| Glyur000346s00018183.1 | PF00534.15 | Glycos_transf_1 | 328 | 475 | 1.10E-20 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.277 |
| SRR1783600 | control | 0.288 |
| SRR1783602 | moderate drought stress | 0.610 |
| SRR1811619 | moderate drought stress | 0.621 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.060 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.560 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.865 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.808 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.504 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.361 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.366 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.472 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 2.619 |
| SRR2868004 | Drought Stress(Tissue:root) | 3.354 |
| SRR2967015 | Control (Tissue:root) | 2.169 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.310 |
| SRR9715740 | Leave | 0.537 |
| SRR9715741 | Leave | 0.707 |
| SRR9715739 | Root | 0.866 |
| SRR9715742 | Root | 1.120 |
| SRR9715743 | Root | 1.124 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 58.142 |
| SRR8749028 | MeJA induced 9h | 59.225 |
| SRR8749029 | MeJA induced 9h | 26.034 |
| SRR8749030 | Uninduced | 22.085 |
| SRR8749031 | Uninduced | 7.461 |
| SRR8749032 | Uninduced | 9.073 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 1.176 |
| SRR8400027 | Control-Root | 0.523 |