Gene detail information of Glyur000346s00018187.2 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G19420.1 | 7.00E-156 | Pectinacetylesterase family protein |
| NR | XP_004509522.1 | 0 | PREDICTED: uncharacterized protein LOC101493258 isoform X1 [Cicer arietinum] |
| trEMBL | tr|G7L754|G7L754_MEDTR | 0 | Pectinacetylesterase family protein {ECO:0000313|EMBL:AET03471.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00346 | 112385 | 116948 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | CE13 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K19882 | NOTUM | EC:3.1.1.98 | Wnt signaling pathway | map04310 |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000346s00018187.2 | PF03283.8 | PAE | 16 | 378 | 1.40E-153 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1113.333 |
| SRR1783600 | control | 1121.610 |
| SRR1783602 | moderate drought stress | 455.932 |
| SRR1811619 | moderate drought stress | 453.677 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 82.695 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 82.130 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.903 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.011 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 156.174 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 157.615 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 222.193 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 221.154 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 243.736 |
| SRR2868004 | Drought Stress(Tissue:root) | 98.634 |
| SRR2967015 | Control (Tissue:root) | 103.576 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 448.595 |
| SRR9715740 | Leave | 159.512 |
| SRR9715741 | Leave | 241.742 |
| SRR9715739 | Root | 101.742 |
| SRR9715742 | Root | 176.574 |
| SRR9715743 | Root | 157.262 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 195.175 |
| SRR8749028 | MeJA induced 9h | 153.742 |
| SRR8749029 | MeJA induced 9h | 172.345 |
| SRR8749030 | Uninduced | 89.575 |
| SRR8749031 | Uninduced | 80.776 |
| SRR8749032 | Uninduced | 113.558 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 510.455 |
| SRR8400027 | Control-Root | 565.322 |