Gene detail information of Glyur000346s00018189.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G45290.1 | 3.00E-78 | RING/U-box superfamily protein |
| NR | XP_003548701.1 | 0 | PREDICTED: uncharacterized protein LOC100800896 isoform X1 [Glycine max] |
| Swissprot | tr|Q5EAE9|ATL43_ARATH | 5.00E-10 | RING-H2 finger protein ATL43 (Precursor) |
| trEMBL | tr|K7MGB0|K7MGB0_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA16G17112.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00346 | 133429 | 137426 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000346s00018189.1 | PF13639.1 | zf-RING_2 | 503 | 537 | 3.50E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.084 |
| SRR1783600 | control | 3.968 |
| SRR1783602 | moderate drought stress | 1.414 |
| SRR1811619 | moderate drought stress | 1.410 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.769 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.942 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.081 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.074 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.893 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.801 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 11.555 |
| SRR2868004 | Drought Stress(Tissue:root) | 5.977 |
| SRR2967015 | Control (Tissue:root) | 6.895 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 1.625 |
| SRR9715740 | Leave | 0.340 |
| SRR9715741 | Leave | 0.583 |
| SRR9715739 | Root | 0.298 |
| SRR9715742 | Root | 1.622 |
| SRR9715743 | Root | 0.894 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.092 |
| SRR8749028 | MeJA induced 9h | 0.768 |
| SRR8749029 | MeJA induced 9h | 0.432 |
| SRR8749030 | Uninduced | 0.046 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.019 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 7.220 |
| SRR8400027 | Control-Root | 7.922 |