Gene detail information of Glyur000346s00018190.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G47570.1 | 0 | Leucine-rich repeat protein kinase family protein |
| NR | KEH20118.1 | 0 | LRR receptor-like kinase family protein [Medicago truncatula] |
| COG | YP_004775215.1 | 5.00E-56 | RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745] |
| Swissprot | tr|C0LGP4|Y3475_ARATH | 0 | Probable LRR receptor-like serine/threonine-protein kinase At3g47570 (Precursor) |
| trEMBL | tr|A0A072TTD4|A0A072TTD4_MEDTR | 0 | LRR receptor-like kinase family protein {ECO:0000313|EMBL:KEH20118.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00346 | 139533 | 142984 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | PPC:1.12.4 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000346s00018190.1 | PF08263.7 | LRRNT_2 | 35 | 74 | 4.80E-12 |
| Glyur000346s00018190.1 | PF00560.28 | LRR_1 | 127 | 149 | 0.56 |
| Glyur000346s00018190.1 | PF13516.1 | LRR_6 | 173 | 196 | 0.42 |
| Glyur000346s00018190.1 | PF12799.2 | LRR_4 | 451 | 483 | 4.00E-08 |
| Glyur000346s00018190.1 | PF13855.1 | LRR_8 | 544 | 603 | 2.70E-09 |
| Glyur000346s00018190.1 | PF00069.20 | Pkinase | 714 | 886 | 1.10E-30 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.030 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.030 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 2.109 |
| SRR2868004 | Drought Stress(Tissue:root) | 1.627 |
| SRR2967015 | Control (Tissue:root) | 1.447 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.183 |
| SRR8749028 | MeJA induced 9h | 0.835 |
| SRR8749029 | MeJA induced 9h | 0.174 |
| SRR8749030 | Uninduced | 0.562 |
| SRR8749031 | Uninduced | 0.488 |
| SRR8749032 | Uninduced | 0.160 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.198 |
| SRR8400027 | Control-Root | 0.109 |