Gene detail information of Glyur000347s00029048.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G05150.10Calcium-binding tetratricopeptide family protein
NRXP_003590173.10TPR repeat-containing protein, putative [Medicago truncatula]
COGYP_001864361.12.00E-26hypothetical protein Npun_R0666 [Nostoc punctiforme PCC 73102]
Swissprottr|O23052|Y1515_ARATH0Uncharacterized TPR repeat-containing protein At1g05150
trEMBLtr|G7I6P0|G7I6P0_MEDTR0Calcium-binding EF hand protein {ECO:0000313|EMBL:AES60424.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00347143900146308-


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGTnc


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

molecular_function

GO:0005509  calcium ion binding

GO:0005515  protein binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000347s00029048.1PF13414.1TPR_112392961.50E-06
Glyur000347s00029048.1PF07719.12TPR_23113430.024
Glyur000347s00029048.1PF13414.1TPR_113464096.70E-13
Glyur000347s00029048.1PF13414.1TPR_114144746.30E-10


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control21.831
SRR1783600control22.268
SRR1783602moderate drought stress17.201
SRR1811619moderate drought stress20.081

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain31.859
DRR006520Root Summer glycyrrhizin high producing strain27.262
DRR006521Root Winter glycyrrhizin high producing strain6.724
DRR006522Root Winter glycyrrhizin high producing strain6.376
DRR006523Root Summer glycyrrhizin low producing strain40.936
DRR006524Root Summer glycyrrhizin low producing strain40.619
DRR006525Leaf Summer glycyrrhizin high producing strain12.094
DRR006526Leaf Summer glycyrrhizin high producing strain12.052

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)42.712
SRR2868004Drought Stress(Tissue:root)37.482
SRR2967015Control (Tissue:root)41.029

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave27.462
SRR9715740Leave23.728
SRR9715741Leave28.117
SRR9715739Root44.152
SRR9715742Root37.323
SRR9715743Root41.163

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h13.897
SRR8749028MeJA induced 9h16.352
SRR8749029MeJA induced 9h9.551
SRR8749030Uninduced11.724
SRR8749031Uninduced13.015
SRR8749032Uninduced10.743

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root33.289
SRR8400027Control-Root35.823

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved