Gene detail information of Glyur000348s00020028.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G03110.11.00E-128Transducin/WD40 repeat-like superfamily protein
NRXP_004493690.10PREDICTED: tRNA (guanine-N(7)-)-methyltransferase subunit WDR4-like [Cicer arietinum]
COGYP_003885555.13.00E-13sigma 54 interacting domain-containing protein [Cyanothece sp. PCC 7822]
Swissprottr|P93340|GBLP_NICPL3.00E-06Guanine nucleotide-binding protein subunit beta-like protein
trEMBLtr|I1JNW2|I1JNW2_SOYBN0tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit {ECO:0000256|HAMAP-Rule:MF_03056}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold003484714050905+


Gene family

Gene familysubfamily
Ubiquitin FamilyDWD


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0036265  RNA (guanine-N7)-methylation


molecular_function

GO:0005515  protein binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000348s00020028.1PF00400.27WD4056852.50E-05
Glyur000348s00020028.1PF00400.27WD401451700.0013
Glyur000348s00020028.1PF00400.27WD401892241.20E-08


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control9.635
SRR1783600control9.920
SRR1783602moderate drought stress12.196
SRR1811619moderate drought stress11.806

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain31.057
DRR006520Root Summer glycyrrhizin high producing strain31.243
DRR006521Root Winter glycyrrhizin high producing strain18.522
DRR006522Root Winter glycyrrhizin high producing strain17.857
DRR006523Root Summer glycyrrhizin low producing strain18.784
DRR006524Root Summer glycyrrhizin low producing strain18.283
DRR006525Leaf Summer glycyrrhizin high producing strain13.982
DRR006526Leaf Summer glycyrrhizin high producing strain14.020

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)32.455
SRR2868004Drought Stress(Tissue:root)31.708
SRR2967015Control (Tissue:root)31.012

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave30.088
SRR9715740Leave25.987
SRR9715741Leave34.071
SRR9715739Root19.508
SRR9715742Root26.109
SRR9715743Root26.308

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h23.685
SRR8749028MeJA induced 9h15.137
SRR8749029MeJA induced 9h13.891
SRR8749030Uninduced9.545
SRR8749031Uninduced6.483
SRR8749032Uninduced8.762

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root36.665
SRR8400027Control-Root40.325

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved