Gene detail information of Glyur000348s00020041.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G02730.12.00E-137Transducin/WD40 repeat-like superfamily protein
NRXP_004495198.10PREDICTED: WD repeat-containing protein 5-like [Cicer arietinum]
COGYP_001864889.13.00E-63hypothetical protein Npun_F1222 [Nostoc punctiforme PCC 73102]
Swissprottr|Q8W1K8|MUT11_CHLRE3.00E-80Protein Mut11
trEMBLtr|A0A0A0K8V6|A0A0A0K8V6_CUCSA0Uncharacterized protein {ECO:0000313|EMBL:KGN44807.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00348118176120388-


Gene family

Gene familysubfamily
Ubiquitin FamilyDWD


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000348s00020041.1PF00400.27WD4019542.00E-11
Glyur000348s00020041.1PF00400.27WD4060968.90E-12
Glyur000348s00020041.1PF00400.27WD401001384.80E-13
Glyur000348s00020041.1PF00400.27WD401421805.10E-11
Glyur000348s00020041.1PF00400.27WD401982230.06
Glyur000348s00020041.1PF00400.27WD402272683.10E-07
Glyur000348s00020041.1PF00400.27WD402743113.70E-08


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control27.130
SRR1783600control27.506
SRR1783602moderate drought stress34.719
SRR1811619moderate drought stress35.105

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain23.596
DRR006520Root Summer glycyrrhizin high producing strain22.753
DRR006521Root Winter glycyrrhizin high producing strain30.842
DRR006522Root Winter glycyrrhizin high producing strain30.534
DRR006523Root Summer glycyrrhizin low producing strain23.383
DRR006524Root Summer glycyrrhizin low producing strain23.764
DRR006525Leaf Summer glycyrrhizin high producing strain12.533
DRR006526Leaf Summer glycyrrhizin high producing strain12.700

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)15.727
SRR2868004Drought Stress(Tissue:root)16.257
SRR2967015Control (Tissue:root)17.285

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave14.815
SRR9715740Leave15.387
SRR9715741Leave18.419
SRR9715739Root26.340
SRR9715742Root19.739
SRR9715743Root17.976

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h20.206
SRR8749028MeJA induced 9h14.332
SRR8749029MeJA induced 9h17.490
SRR8749030Uninduced18.723
SRR8749031Uninduced14.628
SRR8749032Uninduced14.284

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root14.367
SRR8400027Control-Root12.962

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved