Gene detail information of Glyur000349s00021103.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G35610.1 | 0 | xyloglucanase 113 |
| NR | XP_006590766.1 | 0 | PREDICTED: uncharacterized protein LOC100789338 [Glycine max] |
| trEMBL | tr|K7LNS4|K7LNS4_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G09650.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00349 | 125831 | 131263 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT77 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K20784 | XEG113 | EC:2.4.2.- | Other types of O-glycan biosynthesis | map00514 |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000349s00021103.1 | PF03407.11 | Nucleotid_trans | 153 | 377 | 8.40E-55 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 10.506 |
| SRR1783600 | control | 10.573 |
| SRR1783602 | moderate drought stress | 11.099 |
| SRR1811619 | moderate drought stress | 10.783 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.283 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.065 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.370 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.260 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 10.983 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 11.057 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.628 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.442 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 31.387 |
| SRR2868004 | Drought Stress(Tissue:root) | 32.163 |
| SRR2967015 | Control (Tissue:root) | 36.295 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 11.602 |
| SRR9715740 | Leave | 13.628 |
| SRR9715741 | Leave | 14.046 |
| SRR9715739 | Root | 3.751 |
| SRR9715742 | Root | 11.229 |
| SRR9715743 | Root | 8.948 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 35.026 |
| SRR8749028 | MeJA induced 9h | 34.586 |
| SRR8749029 | MeJA induced 9h | 25.208 |
| SRR8749030 | Uninduced | 21.279 |
| SRR8749031 | Uninduced | 14.116 |
| SRR8749032 | Uninduced | 11.174 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 22.201 |
| SRR8400027 | Control-Root | 19.803 |