Gene detail information of Glyur000349s00021108.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G45360.1 | 2.00E-99 | F-box family protein |
| NR | XP_004512325.1 | 0 | PREDICTED: F-box protein SKIP31-like [Cicer arietinum] |
| Swissprot | tr|Q9FHK0|SKI31_ARATH | 2.00E-132 | F-box protein SKIP31 |
| trEMBL | tr|I1J879|I1J879_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G35750.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00349 | 151513 | 154745 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000349s00021108.1 | PF12937.2 | F-box-like | 81 | 125 | 1.20E-11 |
| Glyur000349s00021108.1 | PF03048.9 | Herpes_UL92 | 224 | 282 | 8.00E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 15.370 |
| SRR1783600 | control | 15.746 |
| SRR1783602 | moderate drought stress | 18.695 |
| SRR1811619 | moderate drought stress | 19.086 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 14.031 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 14.042 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 37.637 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 37.017 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 14.495 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 14.535 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.754 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 8.707 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 28.541 |
| SRR2868004 | Drought Stress(Tissue:root) | 23.144 |
| SRR2967015 | Control (Tissue:root) | 28.139 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 14.778 |
| SRR9715740 | Leave | 20.415 |
| SRR9715741 | Leave | 20.000 |
| SRR9715739 | Root | 15.435 |
| SRR9715742 | Root | 16.811 |
| SRR9715743 | Root | 16.987 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 16.243 |
| SRR8749028 | MeJA induced 9h | 19.080 |
| SRR8749029 | MeJA induced 9h | 11.776 |
| SRR8749030 | Uninduced | 15.536 |
| SRR8749031 | Uninduced | 14.150 |
| SRR8749032 | Uninduced | 14.045 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 35.647 |
| SRR8400027 | Control-Root | 33.558 |