Gene detail information of Glyur000349s00021109.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G31760.12.00E-07SWIB/MDM2 domain superfamily protein
NRAFK40164.15.34E-67unknown [Lotus japonicus]
trEMBLtr|I3SIS2|I3SIS2_LOTJA2.00E-67Uncharacterized protein {ECO:0000313|EMBL:AFK40164.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00349156301157361+


Gene family

Gene familysubfamily
Transcription Factors FamilySWI/SNF-BAF60b


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000349s00021109.1PF02201.13SWIB321030.00029


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control47.646
SRR1783600control47.911
SRR1783602moderate drought stress36.914
SRR1811619moderate drought stress37.203

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain65.366
DRR006520Root Summer glycyrrhizin high producing strain64.608
DRR006521Root Winter glycyrrhizin high producing strain38.299
DRR006522Root Winter glycyrrhizin high producing strain37.918
DRR006523Root Summer glycyrrhizin low producing strain52.143
DRR006524Root Summer glycyrrhizin low producing strain51.938
DRR006525Leaf Summer glycyrrhizin high producing strain19.878
DRR006526Leaf Summer glycyrrhizin high producing strain19.891

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)73.341
SRR2868004Drought Stress(Tissue:root)60.640
SRR2967015Control (Tissue:root)57.894

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave40.433
SRR9715740Leave50.092
SRR9715741Leave46.446
SRR9715739Root55.765
SRR9715742Root56.812
SRR9715743Root54.602

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h25.480
SRR8749028MeJA induced 9h16.212
SRR8749029MeJA induced 9h25.018
SRR8749030Uninduced15.864
SRR8749031Uninduced9.923
SRR8749032Uninduced12.751

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root86.686
SRR8400027Control-Root91.638

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved