Gene detail information of Glyur000349s00021110.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G35605.15.00E-22SWIB/MDM2 domain superfamily protein
NRXP_004512323.13.27E-59PREDICTED: upstream activation factor subunit UAF30-like [Cicer arietinum]
COGYP_002130904.15.00E-21SWIB-domain-containing protein implicated in chromatin remodeling [Phenylobacterium zucineum HLK1]
Swissprottr|Q9FMT4|SNF12_ARATH2.00E-06SWI/SNF complex component SNF12 homolog
trEMBLtr|G7K408|G7K408_MEDTR7.00E-55Uncharacterized protein {ECO:0000313|EMBL:AFK37033.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00349159903161649+


Gene family

Gene familysubfamily
Transcription Factors FamilySWI/SNF-BAF60b


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

molecular_function

GO:0005515  protein binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000349s00021110.1PF02201.13SWIB511263.00E-29


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control45.690
SRR1783600control46.195
SRR1783602moderate drought stress40.641
SRR1811619moderate drought stress40.588

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain59.333
DRR006520Root Summer glycyrrhizin high producing strain58.557
DRR006521Root Winter glycyrrhizin high producing strain18.875
DRR006522Root Winter glycyrrhizin high producing strain18.263
DRR006523Root Summer glycyrrhizin low producing strain50.378
DRR006524Root Summer glycyrrhizin low producing strain50.589
DRR006525Leaf Summer glycyrrhizin high producing strain32.192
DRR006526Leaf Summer glycyrrhizin high producing strain31.749

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)69.955
SRR2868004Drought Stress(Tissue:root)52.910
SRR2967015Control (Tissue:root)47.720

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave36.460
SRR9715740Leave36.962
SRR9715741Leave34.292
SRR9715739Root71.130
SRR9715742Root40.792
SRR9715743Root46.706

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h68.893
SRR8749028MeJA induced 9h21.469
SRR8749029MeJA induced 9h34.701
SRR8749030Uninduced4.734
SRR8749031Uninduced2.158
SRR8749032Uninduced3.756

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root64.353
SRR8400027Control-Root66.445

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved