Gene detail information of Glyur000350s00020066.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G13260.1 | 3.00E-151 | Flavin-binding monooxygenase family protein |
| NR | XP_004512975.1 | 0 | PREDICTED: indole-3-pyruvate monooxygenase YUCCA2-like isoform X1 [Cicer arietinum] |
| COG | NP_108142.1 | 6.00E-68 | dimethylaniline monooxygenase [Mesorhizobium loti MAFF303099] |
| Swissprot | tr|Q9SVQ1|YUC2_ARATH | 0 | Indole-3-pyruvate monooxygenase YUCCA2 |
| trEMBL | tr|A0A072UBE4|A0A072UBE4_MEDTR | 0 | Flavin-containing monooxygenase {ECO:0000256|RuleBase:RU361177} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00350 | 96940 | 99605 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K11816 | YUCCA | EC:1.14.13.168 | Tryptophan metabolism | map00380 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000350s00020066.1 | PF13738.1 | Pyr_redox_3 | 34 | 230 | 6.50E-21 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.340 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.313 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 2.050 |
| SRR2868004 | Drought Stress(Tissue:root) | 1.531 |
| SRR2967015 | Control (Tissue:root) | 1.315 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.538 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.100 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.016 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.049 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.000 |
| SRR8400027 | Control-Root | 0.243 |