Gene detail information of Glyur000352s00022294.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G71350.10eukaryotic translation initiation factor SUI1 family protein
NRXP_004513398.10PREDICTED: eukaryotic translation initiation factor 2D-like isoform X1 [Cicer arietinum]
trEMBLtr|I1LVH4|I1LVH4_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G37040.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold003522869537646+


Gene family

Gene familysubfamily
Transcription Factors FamilySWI/SNF-BAF60b


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0006413  translational initiation


molecular_function

GO:0003723  RNA binding

GO:0003743  translation initiation factor activity

GO:0005515  protein binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000352s00022294.1PF02201.13SWIB4054560.00029
Glyur000352s00022294.1PF01253.17SUI14995801.70E-17


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control10.554
SRR1783600control10.646
SRR1783602moderate drought stress13.528
SRR1811619moderate drought stress13.457

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain19.513
DRR006520Root Summer glycyrrhizin high producing strain19.218
DRR006521Root Winter glycyrrhizin high producing strain20.947
DRR006522Root Winter glycyrrhizin high producing strain20.777
DRR006523Root Summer glycyrrhizin low producing strain16.140
DRR006524Root Summer glycyrrhizin low producing strain16.122
DRR006525Leaf Summer glycyrrhizin high producing strain6.973
DRR006526Leaf Summer glycyrrhizin high producing strain6.890

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)17.181
SRR2868004Drought Stress(Tissue:root)17.411
SRR2967015Control (Tissue:root)18.464

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave8.616
SRR9715740Leave11.856
SRR9715741Leave10.647
SRR9715739Root1.660
SRR9715742Root9.423
SRR9715743Root8.738

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h22.923
SRR8749028MeJA induced 9h15.970
SRR8749029MeJA induced 9h22.391
SRR8749030Uninduced11.557
SRR8749031Uninduced15.278
SRR8749032Uninduced11.864

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root16.015
SRR8400027Control-Root15.660

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved