Gene detail information of Glyur000352s00022304.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G36860.10LIM domain-containing protein
NRXP_004509228.10PREDICTED: protein DA1-related 1-like isoform X1 [Cicer arietinum]
COGYP_007039105.13.00E-07hypothetical protein BN6_49630 [Saccharothrix espanaensis DSM 44229]
Swissprottr|Q8W4F0|DAR1_ARATH0Protein DA1-related 1
trEMBLtr|V7CCS6|V7CCS6_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW28002.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00352165103171137+


Gene family

Gene familysubfamily
Transcription Factors FamilyLIM


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000352s00022304.1PF00412.17LIM1582121.00E-08
Glyur000352s00022304.1PF12315.3DUF36333105312.20E-101


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control7.662
SRR1783600control7.542
SRR1783602moderate drought stress8.117
SRR1811619moderate drought stress8.263

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain8.642
DRR006520Root Summer glycyrrhizin high producing strain8.527
DRR006521Root Winter glycyrrhizin high producing strain9.471
DRR006522Root Winter glycyrrhizin high producing strain8.937
DRR006523Root Summer glycyrrhizin low producing strain16.551
DRR006524Root Summer glycyrrhizin low producing strain15.972
DRR006525Leaf Summer glycyrrhizin high producing strain7.348
DRR006526Leaf Summer glycyrrhizin high producing strain7.271

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)15.580
SRR2868004Drought Stress(Tissue:root)15.778
SRR2967015Control (Tissue:root)15.737

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave10.270
SRR9715740Leave12.284
SRR9715741Leave13.083
SRR9715739Root2.649
SRR9715742Root9.244
SRR9715743Root7.844

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h4.420
SRR8749028MeJA induced 9h5.894
SRR8749029MeJA induced 9h3.517
SRR8749030Uninduced3.266
SRR8749031Uninduced0.955
SRR8749032Uninduced0.768

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root9.284
SRR8400027Control-Root12.017

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved