Gene detail information of Glyur000353s00015526.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G18640.14.00E-38Zinc finger C-x8-C-x5-C-x3-H type family protein
NRXP_004502920.10PREDICTED: zinc finger CCCH domain-containing protein 38-like [Cicer arietinum]
Swissprottr|Q9LIH5|C3H38_ARATH2.00E-48Zinc finger CCCH domain-containing protein 38
trEMBLtr|V7AVN2|V7AVN2_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW09702.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold003531142519336+


Gene family

Gene familysubfamily
Transcription Factors FamilyC3H


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0046872  metal ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000353s00015526.1PF00642.19zf-CCCH1511724.10E-05


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control13.613
SRR1783600control13.780
SRR1783602moderate drought stress15.331
SRR1811619moderate drought stress15.291

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain15.571
DRR006520Root Summer glycyrrhizin high producing strain15.442
DRR006521Root Winter glycyrrhizin high producing strain15.013
DRR006522Root Winter glycyrrhizin high producing strain14.649
DRR006523Root Summer glycyrrhizin low producing strain17.396
DRR006524Root Summer glycyrrhizin low producing strain17.223
DRR006525Leaf Summer glycyrrhizin high producing strain10.254
DRR006526Leaf Summer glycyrrhizin high producing strain10.030

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)16.647
SRR2868004Drought Stress(Tissue:root)15.452
SRR2967015Control (Tissue:root)17.527

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave13.545
SRR9715740Leave15.246
SRR9715741Leave14.230
SRR9715739Root1.061
SRR9715742Root11.508
SRR9715743Root9.069

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h18.894
SRR8749028MeJA induced 9h23.364
SRR8749029MeJA induced 9h13.871
SRR8749030Uninduced19.787
SRR8749031Uninduced18.510
SRR8749032Uninduced14.411

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root17.911
SRR8400027Control-Root16.280

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved