Gene detail information of Glyur000353s00015528.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G21330.1 | 9.00E-23 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
| NR | KHN09599.1 | 6.12E-49 | Transcription factor IND [Glycine soja] |
| Swissprot | tr|Q8S3D2|BH087_ARATH | 7.00E-31 | Transcription factor bHLH87 |
| trEMBL | tr|K7KLH5|K7KLH5_SOYBN | 3.00E-49 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA04G39210.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00353 | 20329 | 20919 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | bHLH |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000353s00015528.1 | PF00010.21 | HLH | 116 | 155 | 2.50E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.429 |
| SRR1783600 | control | 0.433 |
| SRR1783602 | moderate drought stress | 1.207 |
| SRR1811619 | moderate drought stress | 1.197 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.105 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.718 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.871 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.658 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.174 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.810 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.838 |
| SRR2868004 | Drought Stress(Tissue:root) | 1.399 |
| SRR2967015 | Control (Tissue:root) | 1.932 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.430 |
| SRR9715739 | Root | 0.954 |
| SRR9715742 | Root | 0.372 |
| SRR9715743 | Root | 0.618 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.218 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.431 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 3.213 |
| SRR8400027 | Control-Root | 6.950 |