Gene detail information of Glyur000354s00015190.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G78760.1 | 5.00E-13 | F-box/RNI-like superfamily protein |
| NR | XP_004496008.1 | 4.34E-32 | PREDICTED: putative F-box/LRR-repeat protein At3g49150-like [Cicer arietinum] |
| Swissprot | tr|Q9ZV94|FDL11_ARATH | 7.00E-15 | Putative F-box/FBD/LRR-repeat protein At1g78760 |
| trEMBL | tr|A0A072VMQ5|A0A072VMQ5_MEDTR | 8.00E-29 | F-box/RNI/FBD-like domain protein {ECO:0000313|EMBL:KEH42871.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00354 | 49972 | 50243 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000354s00015190.1 | PF00646.28 | F-box | 16 | 53 | 5.20E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.168 |
| SRR1783600 | control | 4.300 |
| SRR1783602 | moderate drought stress | 3.971 |
| SRR1811619 | moderate drought stress | 4.463 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.234 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.381 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.490 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.919 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.849 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.625 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.390 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.217 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 9.666 |
| SRR2868004 | Drought Stress(Tissue:root) | 9.075 |
| SRR2967015 | Control (Tissue:root) | 10.832 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 3.771 |
| SRR9715740 | Leave | 2.163 |
| SRR9715741 | Leave | 3.253 |
| SRR9715739 | Root | 3.193 |
| SRR9715742 | Root | 4.469 |
| SRR9715743 | Root | 4.228 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.257 |
| SRR8749028 | MeJA induced 9h | 8.542 |
| SRR8749029 | MeJA induced 9h | 4.771 |
| SRR8749030 | Uninduced | 1.584 |
| SRR8749031 | Uninduced | 1.179 |
| SRR8749032 | Uninduced | 1.731 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 13.320 |
| SRR8400027 | Control-Root | 11.726 |