Gene detail

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Gene detail information of Glyur000354s00015195.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G08370.1	1.00E-149	alpha-galactosidase 2
NR	XP_007043147.1	0	Alpha-galactosidase 2 [Theobroma cacao]
COG	YP_005528820.1	1.00E-112	alpha-galactosidase [Amycolatopsis mediterranei S699]
Swissprot	tr\|P14749\|AGAL_CYATE	0	Alpha-galactosidase (Precursor)
trEMBL	tr\|A0A061E9L0\|A0A061E9L0_THECC	0	Alpha-galactosidase {ECO:0000256\|RuleBase:RU361168}

Sequence

Transcript Sequence

>Glyur000354s00015195.1
ATGGCAATGCAATTATATTCATTCTTAGGTGTGAGGTGCAGGTGGTTAACCATGGCAGCAACAGTGGTGTGCATCCTTGTGCTCTTGAATGCAAGTGCTCCATCTGCTGCTGCTGCTGCTGCTCGCTTGTTAGTGAACACAATGTCCACGGAGCAGGCTGGGCGTTGGAGACACCTCATTGAAAATGGGCTGGGCCTCACACCCCCCATGGGGTGGAGTAGCTGGAATCACTTTGGCTGTGATGTTAACGAAAGCATAGCTCGTGAAACAGCTGATGCAATGGTGTCAACGGGGCTTGCAGATTTAGGGTACCGTTACATTAATTTAGATGACTGTTGGGCCGAACTTAATCGAGACGCCGAGGGAAATATGGTTCCAAATGCAGCAACATTTCCTTCAGGAATTAAGGCTCTAGCTGATTATGTTCACAGCAAAGGCTTAAAGCTGGGGATCTATTCNGATGCCGGAAATCAAACATGCAGTAAACGNATGCCTGGATCACTGGGACATGAAGAACAAGATGCAAAAACATTTGCTTCCTGGGGAATTGACTTTTTGAAGTATGATAATTGTGAAAATAATGGTATAAGCCCCAGAGTAAGGTATTTAACTTATGGCTTTCAACTGCAAATAGGTACCTCAATGCTTACAGTTTTATTAAAACCAGGAATTCATATATACATCGTTTATGTATGCTTAAACGCTTTCTCAAACATATATAGGGGATGGGAAGACCCAGCAATTTGGGCCAAAAGTGTGGGAAATAGTTGGAGAACAACTGGAGACATTGAGGATAACTGGAAAAGTATGACTTCCATAGCAGATGCAAATGACCGATGGGCATCTTATGCTGGACCTGGAGGATGGAATGATCCTGACATGCTTGAAGTTGGAAATGGAGGCATGACAACAGAGGAATATCGTGCCCATTTCAGCATATGGGCATTAGCTAAGGCTCCTTTATTGGTTGGTTGTGATATTCGCGCAATGGATCAAACCACATATGAACTAATAAGCAACCCGGAAGTTATTGCAGTAAACCAAGACACNCTAGGAGTTCAAGGAAAGAAAGTGAAAAGTAATAACGATTTGGAGGTGTGGGNAGGTCCTCTATGTGGTAACAAGGTGGCAGTGGTGTTATGGAACAGGAGTTCATCAAATGCAACAGTGACTGCGTCTTGGTCTGACATAGGCCTGGAATCAGGAACCATANTTGATGCAAGAGATTTGTGGGCGCATTCAACACAACCAGCGGTTTCGGGTGAAATCTCAGCTGAATTAGATTCACATGCTTGTAAGATATGGAGTAGCTGGAACCACTTCGGCTGTGATATCAATGAAAGTTTAATACGAGATACAGCTGATGCAATGGTGTCAACAGGCCTTGCTGCCTTAGGGTACAAATACATTAATTTAGATGACTGTTGGGCCGAACTTAATCGAGACCATCAGGGAAATATGGTTCCCAATGCAGCAACATTTCCCTCAGGAATTAAGGCTCTAGCTGACTATGTTCACAGCAAAGGCTTAAAGCTGGGGATCTATTCAGATGCCGGAAATCAAACATGCAGTAAACGTATGCCTGGATCACTGGGACATGAAGAACAAGATGCAAAAACATTTGCTTCCTGGGGAATTGACTTTTTGAAGTATGATAATTGTGAAAATAATGGTATAAGCCCCAGAGTAAGGTACCCGCCAATGAGTGAAGCTTTATTAAAAACTGGAAGGCCAATCTTCTTCTCTATGGGATGGGAAGACCCAGCAACATGGGCCAANAGTGTGGGAAATAGCTGGAGAACAACAGGAGATATTGAGGATAATTGGAAAAGCATGACTTCCATAGCAGATGCAAACGACCGATGGGCATCTTATGCTGGACCTGGAGGATGGAATGATCCTGACATGCTTGAAGTTGGAAATGGAGGCATGACCACAGAGGAATATCGTGCCCATTTCAGCATATGGGCATTGGCTAAGGCCCCTTTAATAATTGGTTGTGATATTGGAGCAATGGATAATACCACCTATGAACTAATAACCAACCCCGAAGTGTGGGCAGGTCCTCTACATGGTAAAAAGGTAGCAGTGGTCTTATGGAATAGAAGTTCATCAAATGCAACAGTGACTGCGACCTGGTCTGACATTGGCCTGAAACCAGGAACTATAGTTGATGCTAGAGATCTATGGGAGCACTCAACACAATCATTGGTTTCGGGAGAAATCTCTGCTCAGTTAGATTCACATGCTTGTAAGATGTATGTTCTGACTCCCAAAAGGNGTTGA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00354	90442	102399	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH27

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K07407	E3.2.1.22B, galA, rafA	EC:3.2.1.22	Galactose metabolism	map00052
			Glycerolipid metabolism	map00561
			Sphingolipid metabolism	map00600
			Glycosphingolipid biosynthesis - globo and isoglobo series	map00603

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function GO:0003824 catalytic activity GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000354s00015195.1	PF02065.13	Melibiase	45	154	9.30E-18
Glyur000354s00015195.1	PF02065.13	Melibiase	434	517	2.20E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.016
SRR1783600	control	0.014
SRR1783602	moderate drought stress	0.006
SRR1811619	moderate drought stress	0.017

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.047
DRR006520	Root Summer glycyrrhizin high producing strain	0.043
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.043
DRR006524	Root Summer glycyrrhizin low producing strain	0.001
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.374
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.344

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.070
SRR2868004	Drought Stress(Tissue:root)	0.021
SRR2967015	Control (Tissue:root)	0.042

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.137
SRR9715740	Leave	0.052
SRR9715741	Leave	0.025
SRR9715739	Root	0.000
SRR9715742	Root	0.000
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.488
SRR8749028	MeJA induced 9h	0.612
SRR8749029	MeJA induced 9h	0.193
SRR8749030	Uninduced	0.223
SRR8749031	Uninduced	0.195
SRR8749032	Uninduced	0.255

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.037
SRR8400027	Control-Root	0.044