Gene detail information of Glyur000354s00015205.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G24060.12.00E-47Dof-type zinc finger DNA-binding family protein
NRXP_007161571.11.62E-121hypothetical protein PHAVU_001G080800g, partial [Phaseolus vulgaris]
Swissprottr|Q8LAP8|DOF46_ARATH3.00E-67Dof zinc finger protein DOF4.6
trEMBLtr|V7CWA5|V7CWA5_PHAVU6.00E-122Uncharacterized protein {ECO:0000313|EMBL:ESW33565.1} (Fragment)

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00354140093142025+


Gene family

Gene familysubfamily
Transcription Factors FamilyC2C2-Dof


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0006355  regulation of transcription, DNA-templated


molecular_function

GO:0003677  DNA binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000354s00015205.1PF02701.10zf-Dof461078.40E-37


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control25.756
SRR1783600control25.788
SRR1783602moderate drought stress16.548
SRR1811619moderate drought stress16.416

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain53.147
DRR006520Root Summer glycyrrhizin high producing strain52.952
DRR006521Root Winter glycyrrhizin high producing strain1.335
DRR006522Root Winter glycyrrhizin high producing strain1.481
DRR006523Root Summer glycyrrhizin low producing strain36.246
DRR006524Root Summer glycyrrhizin low producing strain36.499
DRR006525Leaf Summer glycyrrhizin high producing strain6.277
DRR006526Leaf Summer glycyrrhizin high producing strain6.317

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)14.226
SRR2868004Drought Stress(Tissue:root)12.211
SRR2967015Control (Tissue:root)11.254

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave3.201
SRR9715740Leave3.233
SRR9715741Leave2.767
SRR9715739Root17.568
SRR9715742Root17.629
SRR9715743Root16.228

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.248
SRR8749028MeJA induced 9h0.172
SRR8749029MeJA induced 9h0.174
SRR8749030Uninduced0.000
SRR8749031Uninduced0.000
SRR8749032Uninduced0.000

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root16.387
SRR8400027Control-Root13.192

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved