Gene detail information of Glyur000355s00013927.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G67480.2 | 3.00E-136 | Galactose oxidase/kelch repeat superfamily protein |
| NR | XP_003531188.1 | 0 | PREDICTED: F-box/kelch-repeat protein At1g67480-like isoform X1 [Glycine max] |
| COG | YP_003324485.1 | 4.00E-19 | Kelch repeat-containing protein [Thermobaculum terrenum ATCC BAA-798] |
| Swissprot | tr|Q9CAG8|FBK28_ARATH | 7.00E-171 | F-box/kelch-repeat protein At1g67480 |
| trEMBL | tr|I1KS09|I1KS09_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G10890.5} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00355 | 28548 | 32118 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000355s00013927.1 | PF00646.28 | F-box | 53 | 90 | 8.60E-05 |
| Glyur000355s00013927.1 | PF01344.20 | Kelch_1 | 143 | 189 | 4.20E-07 |
| Glyur000355s00013927.1 | PF01344.20 | Kelch_1 | 191 | 236 | 5.70E-12 |
| Glyur000355s00013927.1 | PF01344.20 | Kelch_1 | 245 | 284 | 3.70E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.541 |
| SRR1783600 | control | 1.524 |
| SRR1783602 | moderate drought stress | 2.870 |
| SRR1811619 | moderate drought stress | 2.743 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.209 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.246 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 10.269 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 10.103 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.088 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.942 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 30.172 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 29.901 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 29.159 |
| SRR2868004 | Drought Stress(Tissue:root) | 62.196 |
| SRR2967015 | Control (Tissue:root) | 69.200 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 87.518 |
| SRR9715740 | Leave | 110.629 |
| SRR9715741 | Leave | 113.915 |
| SRR9715739 | Root | 5.686 |
| SRR9715742 | Root | 15.975 |
| SRR9715743 | Root | 15.935 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 30.510 |
| SRR8749028 | MeJA induced 9h | 32.003 |
| SRR8749029 | MeJA induced 9h | 49.825 |
| SRR8749030 | Uninduced | 53.651 |
| SRR8749031 | Uninduced | 501.271 |
| SRR8749032 | Uninduced | 295.281 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 18.304 |
| SRR8400027 | Control-Root | 14.836 |