Gene detail information of Glyur000355s00013933.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G27900.10RNA helicase family protein
NRXP_003524885.10PREDICTED: ATP-dependent RNA helicase dhx8-like isoform X1 [Glycine max]
COGYP_008153931.11.00E-118ATP-dependent helicase [Sorangium cellulosum So0157-2]
Swissprottr|Q38953|DHX8_ARATH0Probable pre-mRNA-splicing factor ATP-dependent RNA helicase
trEMBLtr|K7KQA5|K7KQA5_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G27850.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold003556328173634+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K12818DHX8, PRP22 EC:3.6.4.13 Spliceosome map03040


Gene Ontology

molecular_function

GO:0003676  nucleic acid binding

GO:0004386  helicase activity

GO:0005524  ATP binding

GO:0008026  ATP-dependent helicase activity



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000355s00013933.1PF00270.24DEAD111631.00E-06
Glyur000355s00013933.1PF00271.26Helicase_C2433064.50E-08
Glyur000355s00013933.1PF04408.18HA23714632.80E-21
Glyur000355s00013933.1PF07717.11OB_NTP_bind4976107.50E-20


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control12.177
SRR1783600control12.164
SRR1783602moderate drought stress21.072
SRR1811619moderate drought stress21.205

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain14.888
DRR006520Root Summer glycyrrhizin high producing strain14.388
DRR006521Root Winter glycyrrhizin high producing strain17.280
DRR006522Root Winter glycyrrhizin high producing strain17.309
DRR006523Root Summer glycyrrhizin low producing strain16.957
DRR006524Root Summer glycyrrhizin low producing strain16.575
DRR006525Leaf Summer glycyrrhizin high producing strain6.602
DRR006526Leaf Summer glycyrrhizin high producing strain6.538

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)17.045
SRR2868004Drought Stress(Tissue:root)19.438
SRR2967015Control (Tissue:root)21.309

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave11.121
SRR9715740Leave14.834
SRR9715741Leave12.983
SRR9715739Root5.205
SRR9715742Root11.683
SRR9715743Root11.021

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h12.595
SRR8749028MeJA induced 9h10.031
SRR8749029MeJA induced 9h7.029
SRR8749030Uninduced4.685
SRR8749031Uninduced4.115
SRR8749032Uninduced3.557

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root19.772
SRR8400027Control-Root18.806

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved