Gene detail information of Glyur000355s00013938.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G67560.10PLAT/LH2 domain-containing lipoxygenase family protein
NRXP_004504466.10PREDICTED: lipoxygenase 6, choloroplastic-like [Cicer arietinum]
Swissprottr|Q9CAG3|LOX6_ARATH0Lipoxygenase 6, chloroplastic (Precursor)
trEMBLtr|I1KS01|I1KS01_SOYBN0Lipoxygenase {ECO:0000256|RuleBase:RU003975}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold003558861694444+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00454LOX2S EC:1.13.11.12 Linoleic acid metabolism map00591
alpha-Linolenic acid metabolismmap00592


Gene Ontology

biological_process

GO:0055114  oxidation-reduction process


molecular_function

GO:0005515  protein binding

GO:0016491  oxidoreductase activity

GO:0016702  oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen

GO:0046872  metal ion binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000355s00013938.1PF01477.18PLAT1552185.30E-07
Glyur000355s00013938.1PF00305.14Lipoxygenase2318754.00E-232


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control43.393
SRR1783600control43.562
SRR1783602moderate drought stress43.847
SRR1811619moderate drought stress43.285

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain13.830
DRR006520Root Summer glycyrrhizin high producing strain13.756
DRR006521Root Winter glycyrrhizin high producing strain14.420
DRR006522Root Winter glycyrrhizin high producing strain13.824
DRR006523Root Summer glycyrrhizin low producing strain17.306
DRR006524Root Summer glycyrrhizin low producing strain17.181
DRR006525Leaf Summer glycyrrhizin high producing strain58.500
DRR006526Leaf Summer glycyrrhizin high producing strain58.106

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)44.691
SRR2868004Drought Stress(Tissue:root)54.476
SRR2967015Control (Tissue:root)47.610

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave35.023
SRR9715740Leave29.136
SRR9715741Leave59.524
SRR9715739Root17.149
SRR9715742Root38.925
SRR9715743Root34.063

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h34.535
SRR8749028MeJA induced 9h62.276
SRR8749029MeJA induced 9h38.134
SRR8749030Uninduced62.115
SRR8749031Uninduced53.687
SRR8749032Uninduced36.846

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root42.244
SRR8400027Control-Root41.211

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved