Gene detail information of Glyur000355s00013952.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G26000.1 | 4.00E-102 | Ribonuclease inhibitor |
| NR | XP_004504484.1 | 0 | PREDICTED: F-box protein SKIP14-like [Cicer arietinum] |
| Swissprot | tr|Q9LU91|SKI14_ARATH | 1.00E-132 | F-box protein SKIP14 |
| trEMBL | tr|A0A072TUL9|A0A072TUL9_MEDTR | 0 | F-box SKIP28-like protein {ECO:0000313|EMBL:KEH20543.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00355 | 175528 | 177877 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000355s00013952.1 | PF00646.28 | F-box | 228 | 261 | 0.00017 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 13.159 |
| SRR1783600 | control | 13.188 |
| SRR1783602 | moderate drought stress | 18.585 |
| SRR1811619 | moderate drought stress | 18.961 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 25.056 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 27.159 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 18.122 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 23.849 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 22.111 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 25.001 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 11.207 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 12.888 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 30.871 |
| SRR2868004 | Drought Stress(Tissue:root) | 34.785 |
| SRR2967015 | Control (Tissue:root) | 40.879 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 22.816 |
| SRR9715740 | Leave | 23.302 |
| SRR9715741 | Leave | 26.170 |
| SRR9715739 | Root | 17.245 |
| SRR9715742 | Root | 32.133 |
| SRR9715743 | Root | 22.560 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 11.429 |
| SRR8749028 | MeJA induced 9h | 12.584 |
| SRR8749029 | MeJA induced 9h | 8.860 |
| SRR8749030 | Uninduced | 9.038 |
| SRR8749031 | Uninduced | 15.720 |
| SRR8749032 | Uninduced | 18.105 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 30.704 |
| SRR8400027 | Control-Root | 30.239 |