Gene detail information of Glyur000356s00026070.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G08970.42.00E-62nuclear factor Y, subunit C9
NRXP_004494629.11.51E-169PREDICTED: nuclear transcription factor Y subunit C-9-like [Cicer arietinum]
Swissprottr|Q8L4B2|NFYC9_ARATH8.00E-86Nuclear transcription factor Y subunit C-9
trEMBLtr|I3TAX9|I3TAX9_MEDTR2.00E-167Nuclear transcription factor Y subunit C2 {ECO:0000313|EMBL:AFK49671.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold003561701020131+


Gene family

Gene familysubfamily
Transcription Factors FamilyNF-YC
EAR motif-containing ProteinsNF-YC


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

biological_process

GO:0006355  regulation of transcription, DNA-templated


cellular_component

GO:0005622  intracellular

GO:0016602  CCAAT-binding factor complex


molecular_function

GO:0003700  transcription factor activity, sequence-specific DNA binding

GO:0043565  sequence-specific DNA binding

GO:0046982  protein heterodimerization activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000356s00026070.1PF00808.18CBFD_NFYB_HMF1011646.40E-22


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control55.016
SRR1783600control55.293
SRR1783602moderate drought stress52.182
SRR1811619moderate drought stress52.227

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain57.287
DRR006520Root Summer glycyrrhizin high producing strain55.963
DRR006521Root Winter glycyrrhizin high producing strain47.168
DRR006522Root Winter glycyrrhizin high producing strain46.290
DRR006523Root Summer glycyrrhizin low producing strain50.110
DRR006524Root Summer glycyrrhizin low producing strain49.925
DRR006525Leaf Summer glycyrrhizin high producing strain23.535
DRR006526Leaf Summer glycyrrhizin high producing strain23.611

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)45.270
SRR2868004Drought Stress(Tissue:root)52.725
SRR2967015Control (Tissue:root)53.792

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave16.114
SRR9715740Leave21.616
SRR9715741Leave22.160
SRR9715739Root46.105
SRR9715742Root45.534
SRR9715743Root41.946

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h50.211
SRR8749028MeJA induced 9h31.716
SRR8749029MeJA induced 9h27.059
SRR8749030Uninduced8.085
SRR8749031Uninduced4.931
SRR8749032Uninduced9.289

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root51.861
SRR8400027Control-Root47.589

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved