Gene detail information of Glyur000357s00018118.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G29010.10Enoyl-CoA hydratase/isomerase family
NRXP_003620604.10Peroxisomal fatty acid beta-oxidation multifunctional protein [Medicago truncatula]
COGYP_006370055.14.00E-148peroxisomal bifunctional enzyme [Tistrella mobilis KA081020-065]
Swissprottr|Q9ZPI6|AIM1_ARATH03-hydroxyacyl-CoA dehydrogenase
trEMBLtr|G7KPD3|G7KPD3_MEDTR0Glyoxysomal fatty acid beta-oxidation MFP-A protein {ECO:0000313|EMBL:AES76822.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold003572031326574-


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K10527MFP2 EC:4.2.1.17 1.1.1.35 1.1.1.211 Fatty acid metabolism map01212
Fatty acid degradationmap00071
alpha-Linolenic acid metabolismmap00592


Gene Ontology

biological_process

GO:0006631  fatty acid metabolic process

GO:0008152  metabolic process

GO:0055114  oxidation-reduction process


molecular_function

GO:0003824  catalytic activity

GO:0003857  3-hydroxyacyl-CoA dehydrogenase activity

GO:0016491  oxidoreductase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000357s00018118.1PF00378.15ECH122493.60E-46
Glyur000357s00018118.1PF02737.133HCDH_N3245021.90E-56
Glyur000357s00018118.1PF00725.173HCDH5055983.80E-21
Glyur000357s00018118.1PF00725.173HCDH6377154.90E-05


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control40.967
SRR1783600control40.942
SRR1783602moderate drought stress35.184
SRR1811619moderate drought stress35.023

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain52.491
DRR006520Root Summer glycyrrhizin high producing strain52.122
DRR006521Root Winter glycyrrhizin high producing strain42.465
DRR006522Root Winter glycyrrhizin high producing strain41.325
DRR006523Root Summer glycyrrhizin low producing strain50.338
DRR006524Root Summer glycyrrhizin low producing strain50.017
DRR006525Leaf Summer glycyrrhizin high producing strain17.101
DRR006526Leaf Summer glycyrrhizin high producing strain17.008

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)170.622
SRR2868004Drought Stress(Tissue:root)203.008
SRR2967015Control (Tissue:root)195.559

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave71.380
SRR9715740Leave44.465
SRR9715741Leave80.198
SRR9715739Root27.386
SRR9715742Root96.343
SRR9715743Root86.761

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h91.959
SRR8749028MeJA induced 9h105.543
SRR8749029MeJA induced 9h74.864
SRR8749030Uninduced66.786
SRR8749031Uninduced55.073
SRR8749032Uninduced64.044

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root111.706
SRR8400027Control-Root105.601

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved