Gene detail information of Glyur000357s00018138.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G29080.1 | 1.00E-74 | phytochrome-associated protein 2 |
| NR | XP_003534212.1 | 1.54E-164 | PREDICTED: auxin-responsive protein IAA27 [Glycine max] |
| Swissprot | tr|Q9ZSY8|IAA27_ARATH | 5.00E-98 | Auxin-responsive protein IAA27 |
| trEMBL | tr|I1L4K7|I1L4K7_SOYBN | 6.00E-165 | Auxin-induced protein {ECO:0000256|RuleBase:RU004549} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00357 | 158929 | 163365 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | AUX/IAA |
| EAR motif-containing Proteins | AUX/IAA |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000357s00018138.1 | PF02309.11 | AUX_IAA | 37 | 319 | 2.80E-80 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 23.874 |
| SRR1783600 | control | 24.863 |
| SRR1783602 | moderate drought stress | 42.201 |
| SRR1811619 | moderate drought stress | 40.290 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 116.476 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 114.638 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.468 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.462 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 100.354 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 98.020 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.436 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.177 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 38.070 |
| SRR2868004 | Drought Stress(Tissue:root) | 64.478 |
| SRR2967015 | Control (Tissue:root) | 71.398 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 17.087 |
| SRR9715740 | Leave | 15.719 |
| SRR9715741 | Leave | 29.083 |
| SRR9715739 | Root | 46.530 |
| SRR9715742 | Root | 119.530 |
| SRR9715743 | Root | 103.361 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.221 |
| SRR8749028 | MeJA induced 9h | 0.089 |
| SRR8749029 | MeJA induced 9h | 0.590 |
| SRR8749030 | Uninduced | 0.056 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 85.063 |
| SRR8400027 | Control-Root | 96.734 |