Gene detail information of Glyur000359s00016704.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G29290.21.00E-89NAD(P)-binding Rossmann-fold superfamily protein
NRXP_003539545.18.96E-148PREDICTED: tropinone reductase homolog At1g07440 isoform 1 [Glycine max]
COGYP_004658067.13.00E-68Tropinone reductase I [Runella slithyformis DSM 19594]
Swissprottr|Q9ASX2|TRNH1_ARATH1.00E-109Tropinone reductase homolog At1g07440
trEMBLtr|I3SNR4|I3SNR4_MEDTR1.00E-142Uncharacterized protein {ECO:0000313|EMBL:AFK41906.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold003595900361015-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K08081TR1 EC:1.1.1.206 Tropane, piperidine and pyridine alkaloid biosynthesis map00960


Gene Ontology

biological_process

GO:0008152  metabolic process


molecular_function

GO:0016491  oxidoreductase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000359s00016704.2PF00106.20adh_short211741.10E-30


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control7.017
SRR1783600control7.296
SRR1783602moderate drought stress13.153
SRR1811619moderate drought stress13.736

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain35.508
DRR006520Root Summer glycyrrhizin high producing strain36.089
DRR006521Root Winter glycyrrhizin high producing strain289.356
DRR006522Root Winter glycyrrhizin high producing strain282.090
DRR006523Root Summer glycyrrhizin low producing strain39.124
DRR006524Root Summer glycyrrhizin low producing strain39.247
DRR006525Leaf Summer glycyrrhizin high producing strain0.172
DRR006526Leaf Summer glycyrrhizin high producing strain0.160

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)5.588
SRR2868004Drought Stress(Tissue:root)14.261
SRR2967015Control (Tissue:root)10.169

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave0.669
SRR9715740Leave0.642
SRR9715741Leave2.371
SRR9715739Root6.096
SRR9715742Root79.616
SRR9715743Root61.185

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h230.076
SRR8749028MeJA induced 9h513.908
SRR8749029MeJA induced 9h568.497
SRR8749030Uninduced4020.852
SRR8749031Uninduced3535.251
SRR8749032Uninduced1946.343

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root40.168
SRR8400027Control-Root12.765

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved