Gene detail information of Glyur000359s00016719.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G46640.2 | 5.00E-62 | Homeodomain-like superfamily protein |
| NR | AID16228.1 | 3.62E-129 | sterile nodes [Pisum sativum] |
| Swissprot | tr|Q9SNB4|PCL1_ARATH | 1.00E-82 | Transcription factor LUX |
| trEMBL | tr|A0A068C9V2|A0A068C9V2_PEA | 1.00E-129 | Sterile nodes {ECO:0000313|EMBL:AID16228.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00359 | 121525 | 122472 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | G2-like |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000359s00016719.1 | PF00249.26 | Myb_DNA-binding | 135 | 185 | 9.60E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 14.429 |
| SRR1783600 | control | 15.863 |
| SRR1783602 | moderate drought stress | 15.396 |
| SRR1811619 | moderate drought stress | 16.539 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 29.350 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 31.859 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 22.884 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 22.486 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 63.355 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 64.062 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.414 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 8.865 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 9.613 |
| SRR2868004 | Drought Stress(Tissue:root) | 7.714 |
| SRR2967015 | Control (Tissue:root) | 25.144 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.455 |
| SRR9715740 | Leave | 0.408 |
| SRR9715741 | Leave | 0.310 |
| SRR9715739 | Root | 2.237 |
| SRR9715742 | Root | 2.524 |
| SRR9715743 | Root | 1.451 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 15.949 |
| SRR8749028 | MeJA induced 9h | 13.654 |
| SRR8749029 | MeJA induced 9h | 21.494 |
| SRR8749030 | Uninduced | 4.802 |
| SRR8749031 | Uninduced | 16.154 |
| SRR8749032 | Uninduced | 13.371 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 6.713 |
| SRR8400027 | Control-Root | 8.396 |