Gene detail information of Glyur000359s00016721.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G59550.11.00E-67zinc finger (C3HC4-type RING finger) family protein
NRXP_004507169.10PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cicer arietinum]
Swissprottr|P0CH30|RING1_GOSHI3.00E-37E3 ubiquitin-protein ligase RING1
trEMBLtr|G7JCE1|G7JCE1_MEDTR2.00E-180Zinc finger (C3HC4-type RING finger) family protein {ECO:0000313|EMBL:AES88902.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00359132888133976+


Gene family

Gene familysubfamily
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000359s00016721.1PF14369.1zf-RING_311422.10E-12
Glyur000359s00016721.1PF13639.1zf-RING_21762181.80E-13
Glyur000359s00016721.1PF06547.7DUF11172403543.70E-37


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control17.900
SRR1783600control18.312
SRR1783602moderate drought stress15.753
SRR1811619moderate drought stress15.465

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain487.893
DRR006520Root Summer glycyrrhizin high producing strain486.041
DRR006521Root Winter glycyrrhizin high producing strain16.372
DRR006522Root Winter glycyrrhizin high producing strain12.666
DRR006523Root Summer glycyrrhizin low producing strain286.682
DRR006524Root Summer glycyrrhizin low producing strain396.717
DRR006525Leaf Summer glycyrrhizin high producing strain144.469
DRR006526Leaf Summer glycyrrhizin high producing strain141.939

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)33.378
SRR2868004Drought Stress(Tissue:root)94.392
SRR2967015Control (Tissue:root)563.827

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave511.743
SRR9715740Leave599.313
SRR9715741Leave409.883
SRR9715739Root2077.834
SRR9715742Root1382.021
SRR9715743Root1525.003

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h406.303
SRR8749028MeJA induced 9h392.095
SRR8749029MeJA induced 9h304.417
SRR8749030Uninduced124.291
SRR8749031Uninduced168.401
SRR8749032Uninduced220.757

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root67.266
SRR8400027Control-Root146.815

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved