Gene detail information of Glyur000359s00016724.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G55530.14.00E-85RING/U-box superfamily protein
NRXP_006592188.19.34E-171PREDICTED: E3 ubiquitin-protein ligase SDIR1-like [Glycine max]
Swissprottr|Q9M2S6|SDIR1_ARATH6.00E-121E3 ubiquitin-protein ligase SDIR1
trEMBLtr|C6TJK6|C6TJK6_SOYBN4.00E-160Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G14590.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00359138590141096+


Gene family

Gene familysubfamily
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000359s00016724.1PF13639.1zf-RING_22442866.20E-15


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control17.228
SRR1783600control17.635
SRR1783602moderate drought stress14.788
SRR1811619moderate drought stress14.887

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain16.297
DRR006520Root Summer glycyrrhizin high producing strain16.312
DRR006521Root Winter glycyrrhizin high producing strain30.457
DRR006522Root Winter glycyrrhizin high producing strain30.605
DRR006523Root Summer glycyrrhizin low producing strain15.252
DRR006524Root Summer glycyrrhizin low producing strain14.759
DRR006525Leaf Summer glycyrrhizin high producing strain0.985
DRR006526Leaf Summer glycyrrhizin high producing strain0.978

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)2.113
SRR2868004Drought Stress(Tissue:root)4.253
SRR2967015Control (Tissue:root)3.325

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave2.838
SRR9715740Leave0.058
SRR9715741Leave1.929
SRR9715739Root6.633
SRR9715742Root9.164
SRR9715743Root7.762

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h6.391
SRR8749028MeJA induced 9h1.541
SRR8749029MeJA induced 9h4.050
SRR8749030Uninduced1.357
SRR8749031Uninduced6.784
SRR8749032Uninduced7.767

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root13.191
SRR8400027Control-Root17.711

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved