Gene detail information of Glyur000360s00014607.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G37060.3 | 1.00E-51 | nuclear factor Y, subunit B8 |
| NR | KHN01010.1 | 5.78E-91 | Nuclear transcription factor Y subunit B-8 [Glycine soja] |
| Swissprot | tr|Q8VYK4|NFYB8_ARATH | 5.00E-71 | Nuclear transcription factor Y subunit B-8 |
| trEMBL | tr|V7BEC3|V7BEC3_PHAVU | 6.00E-90 | Uncharacterized protein {ECO:0000313|EMBL:ESW16157.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00360 | 25504 | 26675 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | NF-YB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000360s00014607.1 | PF00808.18 | CBFD_NFYB_HMF | 33 | 97 | 1.50E-29 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.899 |
| SRR1783600 | control | 3.130 |
| SRR1783602 | moderate drought stress | 2.385 |
| SRR1811619 | moderate drought stress | 2.105 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.524 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.090 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.406 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.854 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.823 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.325 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.818 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.517 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 13.375 |
| SRR2868004 | Drought Stress(Tissue:root) | 9.287 |
| SRR2967015 | Control (Tissue:root) | 7.308 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 4.287 |
| SRR9715740 | Leave | 5.768 |
| SRR9715741 | Leave | 4.746 |
| SRR9715739 | Root | 2.819 |
| SRR9715742 | Root | 4.097 |
| SRR9715743 | Root | 3.751 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 17.927 |
| SRR8749028 | MeJA induced 9h | 6.718 |
| SRR8749029 | MeJA induced 9h | 13.667 |
| SRR8749030 | Uninduced | 4.051 |
| SRR8749031 | Uninduced | 6.642 |
| SRR8749032 | Uninduced | 6.452 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 11.179 |
| SRR8400027 | Control-Root | 11.978 |