Gene detail information of Glyur000360s00014611.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G41315.1 | 4.00E-140 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
| NR | BAJ10680.1 | 0 | bHLH transcription factor [Lotus japonicus] |
| Swissprot | tr|Q9FN69|GL3_ARATH | 8.00E-167 | Transcription factor GLABRA 3 |
| trEMBL | tr|D7UPI4|D7UPI4_LOTJA | 0 | BHLH transcription factor {ECO:0000313|EMBL:BAJ10680.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00360 | 42971 | 47524 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | bHLH |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000360s00014611.1 | PF14215.1 | bHLH-MYC_N | 6 | 185 | 2.00E-50 |
| Glyur000360s00014611.1 | PF00010.21 | HLH | 428 | 474 | 1.60E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.427 |
| SRR1783600 | control | 1.471 |
| SRR1783602 | moderate drought stress | 2.276 |
| SRR1811619 | moderate drought stress | 2.295 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.344 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.341 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.411 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.388 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.895 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.897 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 31.226 |
| SRR2868004 | Drought Stress(Tissue:root) | 41.716 |
| SRR2967015 | Control (Tissue:root) | 31.988 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 6.197 |
| SRR9715740 | Leave | 4.853 |
| SRR9715741 | Leave | 7.673 |
| SRR9715739 | Root | 0.798 |
| SRR9715742 | Root | 3.331 |
| SRR9715743 | Root | 2.142 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.830 |
| SRR8749028 | MeJA induced 9h | 4.674 |
| SRR8749029 | MeJA induced 9h | 2.944 |
| SRR8749030 | Uninduced | 9.391 |
| SRR8749031 | Uninduced | 10.324 |
| SRR8749032 | Uninduced | 2.654 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 18.038 |
| SRR8400027 | Control-Root | 13.406 |