Gene detail information of Glyur000360s00014629.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G11640.1 | 2.00E-17 | serine racemase |
| NR | AFK34199.1 | 3.29E-29 | unknown [Medicago truncatula] |
| COG | YP_005031209.1 | 5.00E-06 | putative threonine dehydratase [Azospirillum brasilense Sp245] |
| Swissprot | tr|Q2PGG3|SRR_ARATH | 2.00E-20 | Serine racemase |
| trEMBL | tr|I3S1Q7|I3S1Q7_MEDTR | 1.00E-29 | Uncharacterized protein {ECO:0000313|EMBL:AFK34199.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00360 | 143984 | 144244 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K12235 | SRR | EC:5.1.1.18 | Glycine, serine and threonine metabolism | map00260 |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.138 |
| SRR1783600 | control | 0.091 |
| SRR1783602 | moderate drought stress | 0.490 |
| SRR1811619 | moderate drought stress | 0.422 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.748 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.442 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.428 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.151 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.752 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.424 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.332 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 2.573 |
| SRR2868004 | Drought Stress(Tissue:root) | 2.871 |
| SRR2967015 | Control (Tissue:root) | 2.999 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 2.274 |
| SRR9715740 | Leave | 3.333 |
| SRR9715741 | Leave | 3.773 |
| SRR9715739 | Root | 0.535 |
| SRR9715742 | Root | 1.267 |
| SRR9715743 | Root | 0.653 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.270 |
| SRR8749028 | MeJA induced 9h | 0.324 |
| SRR8749029 | MeJA induced 9h | 0.205 |
| SRR8749030 | Uninduced | 0.258 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.315 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 2.190 |
| SRR8400027 | Control-Root | 1.599 |