Gene detail

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Gene detail information of Glyur000360s00014632.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G41210.1	6.00E-87	glutathione S-transferase THETA 1
NR	AFK36240.1	7.09E-141	unknown [Lotus japonicus]
COG	YP_006218079.1	9.00E-11	glutathione S-transferase [Providencia stuartii MRSN 2154]
Swissprot	tr\|Q9ZRT5\|GSTT1_ARATH	2.00E-108	Glutathione S-transferase T1
trEMBL	tr\|I3S7J8\|I3S7J8_LOTJA	3.00E-141	Uncharacterized protein {ECO:0000313\|EMBL:AFK36240.1}

Sequence

Transcript Sequence

>Glyur000360s00014632.1
ATTTTATTATTCACAGATAAGAAAGCGAGAAGCGTGGTTGTGGAGGAGGGTGTAACGATGGTTGGTTAGTGTGTAGCGAAGAAAGAAAGAAAGAAAGAAAGATGAAGCTCAAAGTGTATGCGGACCGTATGTCCCAGCCTTCCCGTGCCATTCTCATCTTTTGCAAATTGAAATTGAAACGCGAAATCGACAGAGTAAATGGAATAGATTTTGAGGAGATCAAAGTGGAACTATCCAAACGCCAGCAGTTATCCCCCGAATTTCAAGCGGTTAACCCTTTCAAGAAAGTACCTGCTATTGTTGACGGAAGGTTCAAGCTATTTGAGAGGCAGATGATCCATGCAATTCTTATCTATCTTGCTTCTGCCTTTCCAGGAGTTGCAGACCATTGGTACCCAGCTGATGTTTCCAGGAGAGCTAGAATTCACTCCGTGTTAGATTGGCATCACCTGAATTTGCGCCATGGAGCAGCCAAGTTTGTTCTAAATACTGTACTGGCTCCATTACTGGGTCTGCCACTAAACCAACAAGCAGCTGCTGAAGCTGAGAAAACTTTGATATCATCTCTGTCCAAAATAGAGAACATTTGGCTTAAGGGGAACGGGCGGTACTTGCTTGGTGGCTTCCGACCGTCCATAGCAGATCTCAGTCTGCTTTTAGATGAGAAGGATCGTGATCGTATTCTTGGCCCCCACAAGAAAGTTCAGCAATGGATTGAGAGCACAAGAAATGCTACAAGGCCACATTTTGATGAAGTTCACAGTGTCCTCTATAAGCTCAAAATGAAGCTTTCAGCGCAGCAGGCAGGGATTAAAGCCCCACTAACTTCAAAGATGTGACCAATCAAAACCATGCCAGTAGCGTACTTGTAACAACTTTATGTGACCAATCAACCATGCCCCCAATCCNTCCATACATATATATAGTTGGTTGCAATTATCAGGCTTGAAACTTGGAAGATGAAGTTTATGTCTGTATTGAGACCCCATTAATAAGAATGCTAAGCTGGGCAGATAATACATTTGATTGCGATTTAAAGATTCAATCAAGTCCTGAGTGCAGATTTGACAATTATATATGTGAGTCTGTCTGTCTGTCCTTTAAAATTGTCATGCAAAATATTTTAGAGGAGCTGGTAAATTGCTGTAGTATTGGCTACG

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00360	152130	155140	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00799	GST, gst	EC:2.5.1.18	Glutathione metabolism	map00480
			Metabolism of xenobiotics by cytochrome P450	map00980
			Drug metabolism - cytochrome P450	map00982
			Chemical carcinogenesis	map05204
			Fluid shear stress and atherosclerosis	map05418
			Platinum drug resistance	map01524

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000360s00014632.1	PF02798.15	GST_N	32	79	4.30E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	90.275
SRR1783600	control	90.177
SRR1783602	moderate drought stress	96.356
SRR1811619	moderate drought stress	96.583

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	61.911
DRR006520	Root Summer glycyrrhizin high producing strain	61.743
DRR006521	Root Winter glycyrrhizin high producing strain	55.880
DRR006522	Root Winter glycyrrhizin high producing strain	53.552
DRR006523	Root Summer glycyrrhizin low producing strain	58.955
DRR006524	Root Summer glycyrrhizin low producing strain	58.951
DRR006525	Leaf Summer glycyrrhizin high producing strain	164.859
DRR006526	Leaf Summer glycyrrhizin high producing strain	164.205

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	35.738
SRR2868004	Drought Stress(Tissue:root)	43.738
SRR2967015	Control (Tissue:root)	42.332

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	84.939
SRR9715740	Leave	139.497
SRR9715741	Leave	81.513
SRR9715739	Root	22.229
SRR9715742	Root	35.754
SRR9715743	Root	30.606

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	63.218
SRR8749028	MeJA induced 9h	40.725
SRR8749029	MeJA induced 9h	65.852
SRR8749030	Uninduced	49.633
SRR8749031	Uninduced	33.826
SRR8749032	Uninduced	40.070

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	41.133
SRR8400027	Control-Root	36.685