Gene detail information of Glyur000361s00013157.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G39980.12.00E-273-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1
NRKDO38075.15.05E-42hypothetical protein CISIN_1g043430mg, partial [Citrus sinensis]
COGYP_003892456.14.00E-293-deoxy-D-arabinoheptulosonate-7-phosphate synthase [Sulfurimonas autotrophica DSM 16294]
Swissprottr|P37216|AROG_SOLLC3.00E-41Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic (Precursor)
trEMBLtr|A0A067D942|A0A067D942_CITSI2.00E-42Uncharacterized protein {ECO:0000313|EMBL:KDO38075.1} (Fragment)

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold003614320645368+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01626E2.5.1.54, aroF, aroG, aroH EC:2.5.1.54 Biosynthesis of amino acids map01230
Phenylalanine, tyrosine and tryptophan biosynthesismap00400
Quorum sensingmap02024


Gene Ontology

biological_process

GO:0009073  aromatic amino acid family biosynthetic process


molecular_function

GO:0003849  3-deoxy-7-phosphoheptulonate synthase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000361s00013157.1PF01474.11DAHP_synth_21081871.60E-27


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control8.794
SRR1783600control8.026
SRR1783602moderate drought stress16.355
SRR1811619moderate drought stress16.307

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.881
DRR006520Root Summer glycyrrhizin high producing strain0.841
DRR006521Root Winter glycyrrhizin high producing strain0.284
DRR006522Root Winter glycyrrhizin high producing strain0.172
DRR006523Root Summer glycyrrhizin low producing strain0.194
DRR006524Root Summer glycyrrhizin low producing strain0.022
DRR006525Leaf Summer glycyrrhizin high producing strain0.000
DRR006526Leaf Summer glycyrrhizin high producing strain0.000

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)8.401
SRR2868004Drought Stress(Tissue:root)9.979
SRR2967015Control (Tissue:root)7.008

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave0.928
SRR9715740Leave0.900
SRR9715741Leave1.848
SRR9715739Root1.584
SRR9715742Root3.383
SRR9715743Root4.097

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h1.932
SRR8749028MeJA induced 9h7.620
SRR8749029MeJA induced 9h1.840
SRR8749030Uninduced4.129
SRR8749031Uninduced2.505
SRR8749032Uninduced1.502

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root11.324
SRR8400027Control-Root6.874

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved