Gene detail information of Glyur000361s00013159.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G22410.14.00E-31Class-II DAHP synthetase family protein
NRXP_009381500.18.00E-36PREDICTED: phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic-like [Musa acuminata subsp. malaccensis]
COGYP_006371723.19.00E-25phospho-2-dehydro-3-deoxyheptonate aldolase [Tistrella mobilis KA081020-065]
Swissprottr|Q75LR2|AROF_ORYSJ1.00E-35Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic (Precursor)
trEMBLtr|M0RMR2|M0RMR2_MUSAM1.00E-36Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr10P30380_001}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold003614554145786+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01626E2.5.1.54, aroF, aroG, aroH EC:2.5.1.54 Biosynthesis of amino acids map01230
Phenylalanine, tyrosine and tryptophan biosynthesismap00400
Quorum sensingmap02024


Gene Ontology

biological_process

GO:0009073  aromatic amino acid family biosynthetic process


molecular_function

GO:0003849  3-deoxy-7-phosphoheptulonate synthase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000361s00013159.1PF01474.11DAHP_synth_21706.00E-27


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control10.700
SRR1783600control11.106
SRR1783602moderate drought stress20.980
SRR1811619moderate drought stress18.695

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain2.558
DRR006520Root Summer glycyrrhizin high producing strain2.118
DRR006521Root Winter glycyrrhizin high producing strain0.000
DRR006522Root Winter glycyrrhizin high producing strain0.000
DRR006523Root Summer glycyrrhizin low producing strain1.347
DRR006524Root Summer glycyrrhizin low producing strain1.349
DRR006525Leaf Summer glycyrrhizin high producing strain0.756
DRR006526Leaf Summer glycyrrhizin high producing strain0.377

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)23.881
SRR2868004Drought Stress(Tissue:root)28.952
SRR2967015Control (Tissue:root)21.660

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave3.823
SRR9715740Leave1.650
SRR9715741Leave2.153
SRR9715739Root3.619
SRR9715742Root14.562
SRR9715743Root8.227

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h2.718
SRR8749028MeJA induced 9h15.043
SRR8749029MeJA induced 9h2.816
SRR8749030Uninduced13.887
SRR8749031Uninduced7.887
SRR8749032Uninduced5.059

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root24.352
SRR8400027Control-Root23.040

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved