Gene detail information of Glyur000361s00013160.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G22410.14.00E-104Class-II DAHP synthetase family protein
NRKDO81019.13.31E-135hypothetical protein CISIN_1g0097281mg, partial [Citrus sinensis]
COGNP_251533.12.00E-81aldolase [Pseudomonas aeruginosa PAO1]
Swissprottr|P27608|AROF_TOBAC1.00E-130Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic (Precursor)
trEMBLtr|A0A067GMZ6|A0A067GMZ6_CITSI1.00E-135Uncharacterized protein {ECO:0000313|EMBL:KDO81019.1} (Fragment)

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold003614719149113+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01626E2.5.1.54, aroF, aroG, aroH EC:2.5.1.54 Biosynthesis of amino acids map01230
Phenylalanine, tyrosine and tryptophan biosynthesismap00400
Quorum sensingmap02024


Gene Ontology

biological_process

GO:0009073  aromatic amino acid family biosynthetic process


molecular_function

GO:0003849  3-deoxy-7-phosphoheptulonate synthase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000361s00013160.1PF01474.11DAHP_synth_2221975.60E-85


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control26.158
SRR1783600control26.486
SRR1783602moderate drought stress49.504
SRR1811619moderate drought stress50.079

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain6.786
DRR006520Root Summer glycyrrhizin high producing strain5.846
DRR006521Root Winter glycyrrhizin high producing strain0.681
DRR006522Root Winter glycyrrhizin high producing strain0.663
DRR006523Root Summer glycyrrhizin low producing strain1.361
DRR006524Root Summer glycyrrhizin low producing strain1.894
DRR006525Leaf Summer glycyrrhizin high producing strain0.681
DRR006526Leaf Summer glycyrrhizin high producing strain0.810

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)15.612
SRR2868004Drought Stress(Tissue:root)20.180
SRR2967015Control (Tissue:root)17.369

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave6.297
SRR9715740Leave2.776
SRR9715741Leave3.143
SRR9715739Root6.895
SRR9715742Root12.480
SRR9715743Root11.745

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h15.084
SRR8749028MeJA induced 9h26.068
SRR8749029MeJA induced 9h15.154
SRR8749030Uninduced68.038
SRR8749031Uninduced47.068
SRR8749032Uninduced28.480

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root32.297
SRR8400027Control-Root25.947

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved