Gene detail information of Glyur000361s00013166.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G14170.1 | 1.00E-133 | SWIB/MDM2 domain superfamily protein |
| NR | XP_004500645.1 | 0 | PREDICTED: SWI/SNF complex component SNF12 homolog [Cicer arietinum] |
| Swissprot | tr|Q9FMT4|SNF12_ARATH | 2.00E-173 | SWI/SNF complex component SNF12 homolog |
| trEMBL | tr|K7KL60|K7KL60_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA04G37130.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00361 | 99098 | 100959 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | SWI/SNF-BAF60b |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000361s00013166.1 | PF02201.13 | SWIB | 325 | 392 | 3.40E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.689 |
| SRR1783600 | control | 0.718 |
| SRR1783602 | moderate drought stress | 0.410 |
| SRR1811619 | moderate drought stress | 0.328 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.171 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.201 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.019 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.041 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.137 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.137 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.105 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.115 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.793 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.645 |
| SRR2967015 | Control (Tissue:root) | 0.710 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.157 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.026 |
| SRR9715739 | Root | 0.297 |
| SRR9715742 | Root | 0.035 |
| SRR9715743 | Root | 0.039 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.597 |
| SRR8749028 | MeJA induced 9h | 0.285 |
| SRR8749029 | MeJA induced 9h | 0.401 |
| SRR8749030 | Uninduced | 0.252 |
| SRR8749031 | Uninduced | 0.092 |
| SRR8749032 | Uninduced | 0.035 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 1.647 |
| SRR8400027 | Control-Root | 1.870 |