Gene detail information of Glyur000361s00013173.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G50375.1 | 4.00E-135 | cyclopropyl isomerase |
| NR | XP_007137931.1 | 0 | hypothetical protein PHAVU_009G167500g [Phaseolus vulgaris] |
| Swissprot | tr|Q9M643|CCI1_ARATH | 2.00E-170 | Cycloeucalenol cycloisomerase |
| trEMBL | tr|V7AX94|V7AX94_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW09925.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00361 | 142232 | 145873 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K08246 | CPI1 | EC:5.5.1.9 | Steroid biosynthesis | map00100 |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 16.633 |
| SRR1783600 | control | 16.654 |
| SRR1783602 | moderate drought stress | 12.921 |
| SRR1811619 | moderate drought stress | 12.697 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 14.108 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 13.664 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 8.117 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.892 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.681 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.793 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 12.223 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 12.203 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 40.119 |
| SRR2868004 | Drought Stress(Tissue:root) | 33.058 |
| SRR2967015 | Control (Tissue:root) | 35.926 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 20.963 |
| SRR9715740 | Leave | 19.553 |
| SRR9715741 | Leave | 18.164 |
| SRR9715739 | Root | 12.540 |
| SRR9715742 | Root | 11.883 |
| SRR9715743 | Root | 11.339 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 12.470 |
| SRR8749028 | MeJA induced 9h | 13.460 |
| SRR8749029 | MeJA induced 9h | 5.958 |
| SRR8749030 | Uninduced | 6.182 |
| SRR8749031 | Uninduced | 1.687 |
| SRR8749032 | Uninduced | 2.143 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 27.177 |
| SRR8400027 | Control-Root | 28.879 |