Gene detail information of Glyur000362s00017682.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G29880.10glycyl-tRNA synthetase / glycine--tRNA ligase
NRXP_004499600.10PREDICTED: glycine--tRNA ligase 1, mitochondrial-like [Cicer arietinum]
COGYP_008071746.16.00E-144glycyl-tRNA ligase [Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1]
Swissprottr|O23627|SYGM1_ARATH0Glycine--tRNA ligase 1, mitochondrial (Precursor)
trEMBLtr|V7B3U0|V7B3U0_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW11126.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00362162837168138+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01880GARS, glyS1 EC:6.1.1.14 Aminoacyl-tRNA biosynthesis map00970


Gene Ontology

biological_process

GO:0006418  tRNA aminoacylation for protein translation

GO:0006426  glycyl-tRNA aminoacylation


cellular_component

GO:0005737  cytoplasm


molecular_function

GO:0000166  nucleotide binding

GO:0004812  aminoacyl-tRNA ligase activity

GO:0004820  glycine-tRNA ligase activity

GO:0005524  ATP binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000362s00017682.1PF00458.15WHEP-TRS60951.40E-10
Glyur000362s00017682.1PF00587.20tRNA-synt_2b1544362.90E-56
Glyur000362s00017682.1PF03129.15HGTP_anticodon6056922.50E-18


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control41.091
SRR1783600control41.616
SRR1783602moderate drought stress40.041
SRR1811619moderate drought stress40.109

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain46.386
DRR006520Root Summer glycyrrhizin high producing strain46.421
DRR006521Root Winter glycyrrhizin high producing strain37.918
DRR006522Root Winter glycyrrhizin high producing strain37.600
DRR006523Root Summer glycyrrhizin low producing strain42.110
DRR006524Root Summer glycyrrhizin low producing strain42.329
DRR006525Leaf Summer glycyrrhizin high producing strain85.640
DRR006526Leaf Summer glycyrrhizin high producing strain84.830

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)52.025
SRR2868004Drought Stress(Tissue:root)39.792
SRR2967015Control (Tissue:root)37.405

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave81.917
SRR9715740Leave98.993
SRR9715741Leave93.414
SRR9715739Root24.239
SRR9715742Root56.842
SRR9715743Root49.744

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h83.740
SRR8749028MeJA induced 9h85.034
SRR8749029MeJA induced 9h48.570
SRR8749030Uninduced26.737
SRR8749031Uninduced5.828
SRR8749032Uninduced8.316

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root36.158
SRR8400027Control-Root36.021

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved