Gene detail information of Glyur000363s00015351.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G50090.12.00E-116D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein
NRXP_003608318.10Branched-chain-amino-acid aminotransferase [Medicago truncatula]
COGYP_004196118.12.00E-77branched chain amino acid aminotransferase apoenzyme [Desulfobulbus propionicus DSM 2032]
Swissprottr|Q9LPM9|BCAT6_ARATH2.00E-156Branched-chain-amino-acid aminotransferase 6
trEMBLtr|G7JT01|G7JT01_MEDTR0Branched-chain-amino-acid aminotransferase {ECO:0000256|RuleBase:RU004517}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold003631187014200+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00826E2.6.1.42, ilvE EC:2.6.1.42 2-Oxocarboxylic acid metabolism map01210
Biosynthesis of amino acidsmap01230
Cysteine and methionine metabolismmap00270
Valine, leucine and isoleucine degradationmap00280
Valine, leucine and isoleucine biosynthesismap00290
Pantothenate and CoA biosynthesismap00770


Gene Ontology

biological_process

GO:0008152  metabolic process

GO:0009081  branched-chain amino acid metabolic process


molecular_function

GO:0003824  catalytic activity

GO:0004084  branched-chain-amino-acid transaminase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000363s00015351.1PF01063.14Aminotran_4963277.20E-30


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control3.550
SRR1783600control3.649
SRR1783602moderate drought stress10.015
SRR1811619moderate drought stress10.079

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.099
DRR006520Root Summer glycyrrhizin high producing strain0.098
DRR006521Root Winter glycyrrhizin high producing strain0.102
DRR006522Root Winter glycyrrhizin high producing strain0.093
DRR006523Root Summer glycyrrhizin low producing strain0.000
DRR006524Root Summer glycyrrhizin low producing strain0.000
DRR006525Leaf Summer glycyrrhizin high producing strain0.923
DRR006526Leaf Summer glycyrrhizin high producing strain0.820

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)3.690
SRR2868004Drought Stress(Tissue:root)4.958
SRR2967015Control (Tissue:root)7.008

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave1.887
SRR9715740Leave0.175
SRR9715741Leave0.765
SRR9715739Root27.345
SRR9715742Root14.949
SRR9715743Root16.141

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.263
SRR8749028MeJA induced 9h0.426
SRR8749029MeJA induced 9h0.113
SRR8749030Uninduced19.515
SRR8749031Uninduced72.731
SRR8749032Uninduced37.656

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root60.197
SRR8400027Control-Root59.195

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved