Gene detail information of Glyur000363s00015356.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G33680.10Pyridoxal phosphate (PLP)-dependent transferases superfamily protein
NRXP_004504888.10PREDICTED: LL-diaminopimelate aminotransferase, chloroplastic-like [Cicer arietinum]
COGYP_007684.15.00E-162L,L-diaminopimelate aminotransferase [Candidatus Protochlamydia amoebophila UWE25]
Swissprottr|Q93ZN9|DAPAT_ARATH0LL-diaminopimelate aminotransferase, chloroplastic (Precursor)
trEMBLtr|G7JTY4|G7JTY4_MEDTR0LL-diaminopimelate aminotransferase {ECO:0000313|EMBL:AES90518.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold003633140737338+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K10206E2.6.1.83 EC:2.6.1.83 Biosynthesis of amino acids map01230
Lysine biosynthesismap00300


Gene Ontology

biological_process

GO:0009058  biosynthetic process

GO:0009089  lysine biosynthetic process via diaminopimelate


molecular_function

GO:0003824  catalytic activity

GO:0010285  L,L-diaminopimelate aminotransferase activity

GO:0030170  pyridoxal phosphate binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000363s00015356.1PF00155.16Aminotran_1_2904544.60E-35


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control54.519
SRR1783600control54.759
SRR1783602moderate drought stress30.007
SRR1811619moderate drought stress30.241

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain42.838
DRR006520Root Summer glycyrrhizin high producing strain42.472
DRR006521Root Winter glycyrrhizin high producing strain13.357
DRR006522Root Winter glycyrrhizin high producing strain13.063
DRR006523Root Summer glycyrrhizin low producing strain33.400
DRR006524Root Summer glycyrrhizin low producing strain33.300
DRR006525Leaf Summer glycyrrhizin high producing strain38.732
DRR006526Leaf Summer glycyrrhizin high producing strain38.449

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)174.885
SRR2868004Drought Stress(Tissue:root)102.522
SRR2967015Control (Tissue:root)88.889

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave75.980
SRR9715740Leave59.654
SRR9715741Leave66.893
SRR9715739Root37.049
SRR9715742Root65.612
SRR9715743Root57.215

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h68.546
SRR8749028MeJA induced 9h47.953
SRR8749029MeJA induced 9h47.029
SRR8749030Uninduced11.774
SRR8749031Uninduced8.521
SRR8749032Uninduced7.171

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root89.119
SRR8400027Control-Root72.894

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved