Gene detail information of Glyur000363s00015358.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G58440.10FAD/NAD(P)-binding oxidoreductase family protein
NRAHY94896.10squalene epoxidase [Astragalus membranaceus]
COGYP_004346032.11.00E-95Squalene monooxygenase [Fluviicola taffensis DSM 16823]
Swissprottr|O48651|ERG1_PANGI0Squalene monooxygenase
trEMBLtr|A0A075DZG2|A0A075DZG2_ASTME0Squalene epoxidase {ECO:0000313|EMBL:AHY94896.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold003634348047756-


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00511SQLE, ERG1 EC:1.14.14.17 Steroid biosynthesis map00100
Sesquiterpenoid and triterpenoid biosynthesismap00909


Gene Ontology

biological_process

GO:0008152  metabolic process

GO:0055114  oxidation-reduction process


cellular_component

GO:0016021  integral component of membrane


molecular_function

GO:0004506  squalene monooxygenase activity

GO:0016491  oxidoreductase activity

GO:0050660  flavin adenine dinucleotide binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000363s00015358.1PF13450.1NAD_binding_868941.90E-05
Glyur000363s00015358.1PF08491.5SE2144931.40E-121


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control42.121
SRR1783600control42.502
SRR1783602moderate drought stress13.218
SRR1811619moderate drought stress13.105

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain16.494
DRR006520Root Summer glycyrrhizin high producing strain16.408
DRR006521Root Winter glycyrrhizin high producing strain0.045
DRR006522Root Winter glycyrrhizin high producing strain0.045
DRR006523Root Summer glycyrrhizin low producing strain2.313
DRR006524Root Summer glycyrrhizin low producing strain2.155
DRR006525Leaf Summer glycyrrhizin high producing strain107.957
DRR006526Leaf Summer glycyrrhizin high producing strain107.140

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)129.701
SRR2868004Drought Stress(Tissue:root)55.377
SRR2967015Control (Tissue:root)47.196

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave191.359
SRR9715740Leave202.616
SRR9715741Leave179.898
SRR9715739Root23.471
SRR9715742Root80.296
SRR9715743Root66.319

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.457
SRR8749028MeJA induced 9h1.404
SRR8749029MeJA induced 9h0.823
SRR8749030Uninduced0.910
SRR8749031Uninduced0.568
SRR8749032Uninduced0.284

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root76.770
SRR8400027Control-Root83.728

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved