Gene detail information of Glyur000363s00015359.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G09660.14.00E-172peroxisomal NAD-malate dehydrogenase 2
NRAAO27260.10putative malate dehydrogenase [Pisum sativum]
COGNP_462269.14.00E-109malate dehydrogenase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
Swissprottr|P46488|MDHG_CUCSA0Malate dehydrogenase, glyoxysomal (Precursor)
trEMBLtr|Q5JC56|Q5JC56_PEA0Malate dehydrogenase {ECO:0000256|RuleBase:RU003405}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold003635321856285+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00026MDH2 EC:1.1.1.37 Carbon metabolism map01200
Citrate cycle (TCA cycle)map00020
Pyruvate metabolismmap00620
Glyoxylate and dicarboxylate metabolismmap00630
Carbon fixation in photosynthetic organismsmap00710
Cysteine and methionine metabolismmap00270


Gene Ontology

biological_process

GO:0005975  carbohydrate metabolic process

GO:0006108  malate metabolic process

GO:0019752  carboxylic acid metabolic process

GO:0055114  oxidation-reduction process


molecular_function

GO:0003824  catalytic activity

GO:0016491  oxidoreductase activity

GO:0016615  malate dehydrogenase activity

GO:0016616  oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

GO:0030060  L-malate dehydrogenase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000363s00015359.1PF00056.18Ldh_1_N461882.20E-46
Glyur000363s00015359.1PF02866.13Ldh_1_C1903541.50E-49


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control7.328
SRR1783600control7.372
SRR1783602moderate drought stress7.740
SRR1811619moderate drought stress7.429

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain8.835
DRR006520Root Summer glycyrrhizin high producing strain8.688
DRR006521Root Winter glycyrrhizin high producing strain4.827
DRR006522Root Winter glycyrrhizin high producing strain4.964
DRR006523Root Summer glycyrrhizin low producing strain6.493
DRR006524Root Summer glycyrrhizin low producing strain6.575
DRR006525Leaf Summer glycyrrhizin high producing strain238.889
DRR006526Leaf Summer glycyrrhizin high producing strain238.195

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)27.033
SRR2868004Drought Stress(Tissue:root)23.063
SRR2967015Control (Tissue:root)25.361

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave346.550
SRR9715740Leave424.642
SRR9715741Leave282.658
SRR9715739Root33.118
SRR9715742Root16.787
SRR9715743Root20.082

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h12.793
SRR8749028MeJA induced 9h3.618
SRR8749029MeJA induced 9h7.379
SRR8749030Uninduced1.991
SRR8749031Uninduced1.644
SRR8749032Uninduced5.071

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root32.755
SRR8400027Control-Root31.356

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved