Gene detail

Home
Network
Tools
- Search
- Blast
- Motif
- GSEA
- Heatmap Analysis
- JBrowse
Gene family
KEGG
Download
Help

Gene detail information of Glyur000363s00015361.2

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G33670.1	2.00E-138	NAD(P)-linked oxidoreductase superfamily protein
NR	XP_003608332.1	0	Voltage-gated potassium channel subunit beta-2 [Medicago truncatula]
COG	YP_001818307.1	2.00E-102	aldo/keto reductase [Opitutus terrae PB90-1]
Swissprot	tr\|O81884\|GALDH_ARATH	3.00E-177	L-galactose dehydrogenase
trEMBL	tr\|G7JTZ5\|G7JTZ5_MEDTR	0	Aldo/keto reductase family oxidoreductase {ECO:0000313\|EMBL:AES90529.1}

Sequence

Transcript Sequence

>Glyur000363s00015361.2
AGTACAAATGGATCAGATCATGAATCCAAGGTGGGAAACCCAAGAAGGAAGAAGAAGAAGAAGAAGAAGGGGAGAGAGTGAGAGAATGGAGTTACGGGAGCTTGGGAGAACCGGACTGAAGCTGAGCAGCGTGGGGTTCGGAGCATCACCTCTTGGCAACGTCTTCGGTTCTGTTTCCGAGGAACAGGCCAATGCTTCTGTTCGCCTCGCCTTCCAATCCGGCATCAACTTCTTCGACACTTCTCCGTATTACGGAGGGACACTGTCAGAAAAAGTGCTGGGAAAGGCGTTGAAAGCCCTGAACGTGCCGAGAAGTGAATACATAGTGGCAACCAAGTGCGGTCGCTACAAGGATGGCTTTGATTTCAGTGCAGAGAGAGTGACGAGAAGCATAGATGAGAGCTTGGNAAGGTTGCAGCTCGACTATGTCGACATTCTCCAATGCCATGATATTGAATTTGGCTCCTTAGATCAGATTGTTAATGAAACGATTCCGGCACTCCAGAAACTGAAGGAAGCGGGGAAGACTCGATTCATTGGGATCACGGGACTTCCTTTGGGAGTATTTACCTATGTGCTGGATAGGGTTCCGGCGGGAACACTGGATGTGATCCTTTCCTATTGCCATCACTGTATCAATGACTCCACCTTGGAGGACACAGTGCCCTATCTCAAGTCCAAAGGTGTTGGTATTATCAGTGCTTCTCCATTGGCAATGGGACTCCTCACTGAGGCTGGCCCTCCCGATTGGAACCCTGCCTCGCCCCAACTCAAGTCTGCTTGTCAAGCTGCTGCTACCCATTGCAAAGAAAATGGAAAAAACATTTCAAAGTTAGCAATGCAGTACAGCTTGTTAAATAAGGAAATCACATCGGTGCTTGTCGGCATGAAATCTGTCGAACAGGTGGAGGAAAATGTTGCTGCCGCAAGAGAACTTGCAGCTTCTGGAATAGATGAAGAGGCTCTATCAGAAGTTGGAGCCATTCTAAAGCCTGTTAAAAAATCAGTCATGGCTAGTGGAATCCAGAAGAGCTGATCCCCCTCTCCTGTACTCCCTTGCGTTGCCTTTGAAGACATCCTGCAGCTGGCCCATTCTTGTTAAGAATGTTCTTTACTCCTATTCAATAATAGAAGTTTCTCTTACTGCTGCGTGAACCATGTGAGTTCCAGTCTCTGTTTGGTGGGATCAATTTCCATTTTGCATTGGAAAGGTTGTGTTAGAGAATGTTG

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00363	60545	67083	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K17744	GalDH	EC:1.1.1.316	Ascorbate and aldarate metabolism	map00053

Gene Ontology

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000363s00015361.2	PF00248.16	Aldo_ket_red	42	309	7.20E-64

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	40.288
SRR1783600	control	39.224
SRR1783602	moderate drought stress	49.657
SRR1811619	moderate drought stress	49.577

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	36.304
DRR006520	Root Summer glycyrrhizin high producing strain	34.775
DRR006521	Root Winter glycyrrhizin high producing strain	15.084
DRR006522	Root Winter glycyrrhizin high producing strain	15.128
DRR006523	Root Summer glycyrrhizin low producing strain	28.293
DRR006524	Root Summer glycyrrhizin low producing strain	27.583
DRR006525	Leaf Summer glycyrrhizin high producing strain	21.264
DRR006526	Leaf Summer glycyrrhizin high producing strain	20.401

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	62.749
SRR2868004	Drought Stress(Tissue:root)	64.381
SRR2967015	Control (Tissue:root)	64.523

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	28.969
SRR9715740	Leave	29.619
SRR9715741	Leave	24.452
SRR9715739	Root	62.721
SRR9715742	Root	43.748
SRR9715743	Root	49.454

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	39.750
SRR8749028	MeJA induced 9h	26.933
SRR8749029	MeJA induced 9h	32.927
SRR8749030	Uninduced	8.644
SRR8749031	Uninduced	4.998
SRR8749032	Uninduced	8.463

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	68.213
SRR8400027	Control-Root	75.169