Gene detail information of Glyur000363s00015368.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G58290.16.00E-178Glutamyl-tRNA reductase family protein
NRXP_004504877.10PREDICTED: glutamyl-tRNA reductase 2, chloroplastic-like [Cicer arietinum]
COGYP_007108864.15.00E-125glutamyl-tRNA reductase [Geitlerinema sp. PCC 7407]
Swissprottr|P93111|HEM11_CUCSA0Glutamyl-tRNA reductase 1, chloroplastic (Precursor)
trEMBLtr|G7JU04|G7JU04_MEDTR0Glutamyl-tRNA reductase {ECO:0000256|RuleBase:RU000584}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00363107021109376+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K02492hemA EC:1.2.1.70 Porphyrin and chlorophyll metabolism map00860


Gene Ontology

biological_process

GO:0033014  tetrapyrrole biosynthetic process

GO:0055114  oxidation-reduction process


molecular_function

GO:0008883  glutamyl-tRNA reductase activity

GO:0050661  NADP binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000363s00015368.1PF05201.10GlutR_N932444.60E-46
Glyur000363s00015368.1PF01488.15Shikimate_DH2604023.60E-38
Glyur000363s00015368.1PF00745.15GlutR_dimer4165203.20E-27


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control7.875
SRR1783600control8.113
SRR1783602moderate drought stress4.357
SRR1811619moderate drought stress4.188

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain60.371
DRR006520Root Summer glycyrrhizin high producing strain58.807
DRR006521Root Winter glycyrrhizin high producing strain2.485
DRR006522Root Winter glycyrrhizin high producing strain2.532
DRR006523Root Summer glycyrrhizin low producing strain50.600
DRR006524Root Summer glycyrrhizin low producing strain50.846
DRR006525Leaf Summer glycyrrhizin high producing strain7.302
DRR006526Leaf Summer glycyrrhizin high producing strain7.458

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)19.521
SRR2868004Drought Stress(Tissue:root)50.167
SRR2967015Control (Tissue:root)62.254

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave180.706
SRR9715740Leave65.193
SRR9715741Leave197.274
SRR9715739Root241.642
SRR9715742Root459.057
SRR9715743Root407.350

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h72.119
SRR8749028MeJA induced 9h46.775
SRR8749029MeJA induced 9h50.336
SRR8749030Uninduced107.289
SRR8749031Uninduced77.535
SRR8749032Uninduced57.578

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root31.156
SRR8400027Control-Root79.667

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved