Gene detail information of Glyur000364s00018043.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G38460.1 | 3.00E-19 | geranylgeranyl reductase |
| NR | XP_004491403.1 | 4.72E-152 | PREDICTED: heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic-like [Cicer arietinum] |
| COG | YP_007122344.1 | 4.00E-27 | geranylgeranyl pyrophosphate synthase [Microcoleus sp. PCC 7113] |
| Swissprot | tr|Q39108|GGR_ARATH | 3.00E-34 | Heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic (Precursor) |
| trEMBL | tr|G1FMP5|G1FMP5_MEDSA | 4.00E-129 | Geranyl-diphosphate synthase {ECO:0000313|EMBL:AEL29573.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00364 | 70264 | 71205 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K13789 | GGPS | EC:2.5.1.1 2.5.1.10 2.5.1.29 | Terpenoid backbone biosynthesis | map00900 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000364s00018043.1 | PF00348.12 | polyprenyl_synt | 79 | 270 | 1.20E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 118.131 |
| SRR1783600 | control | 118.163 |
| SRR1783602 | moderate drought stress | 201.600 |
| SRR1811619 | moderate drought stress | 191.230 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 69.103 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 69.055 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.698 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.656 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.192 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.701 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.397 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.207 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 4.693 |
| SRR2868004 | Drought Stress(Tissue:root) | 10.830 |
| SRR2967015 | Control (Tissue:root) | 4.647 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 18.429 |
| SRR9715740 | Leave | 5.371 |
| SRR9715741 | Leave | 26.291 |
| SRR9715739 | Root | 116.277 |
| SRR9715742 | Root | 165.386 |
| SRR9715743 | Root | 154.259 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 48.447 |
| SRR8400027 | Control-Root | 21.431 |